Results 51 to 60 of about 3,685 (173)

Fully automated annotation of mitochondrial genomes using a cluster-based approach with de Bruijn graphs

Frontiers in Genetics, 2023
A wide range of scientific fields, such as forensics, anthropology, medicine, and molecular evolution, benefits from the analysis of mitogenomic data. With the development of new sequencing technologies, the amount of mitochondrial sequence data to be ...
Lisa Fiedler, Martin Middendorf, Matthias Bernt   +2 more
doaj   +1 more source

Compressed Weighted de Bruijn Graphs.

, 2021
We propose a new compressed representation for weighted de Bruijn graphs, which is based on the idea of delta-encoding the variations of k-mer abundances on a spanning branching of the graph. Our new data structure is likely to be of practical value: to give an idea, when combined with the compressed BOSS de Bruijn graph representation, it encodes the ...
Italiano G. F., Prezza N., Sinaimeri B., Venturini R.   +3 more
openaire   +6 more sources

Variable-Order de Bruijn Graphs [PDF]

2015 Data Compression Conference, 2015
The de Bruijn graph $G_K$ of a set of strings $S$ is a key data structure in genome assembly that represents overlaps between all the $K$-length substrings of $S$. Construction and navigation of the graph is a space and time bottleneck in practice and the main hurdle for assembling large, eukaryote genomes.
Christina Boucher 0001, Alexander Bowe, Travis Gagie, Simon J. Puglisi, Kunihiko Sadakane   +4 more
openaire   +2 more sources

A De Bruijn–Erdős Theorem for Chordal Graphs [PDF]

The Electronic Journal of Combinatorics, 2015
A special case of a combinatorial theorem of De Bruijn and Erdős asserts that every noncollinear set of $n$ points in the plane determines at least $n$ distinct lines. Chen and Chávtal suggested a possible generalization of this assertion in metric spaces with appropriately defined lines.
Laurent Beaudou, J. Adrian Bondy, Xiaomin Chen, Ehsan Chiniforooshan, Maria Chudnovsky, Vasek Chvátal, Nicolas Fraiman, Yori Zwols   +7 more
openaire   +4 more sources

Number of cycles in the graph of $312$-avoiding permutations [PDF]

Discrete Mathematics & Theoretical Computer Science, 2014
The graph of overlapping permutations is defined in a way analogous to the De Bruijn graph on strings of symbols. However, instead of requiring the tail of one permutation to equal the head of another for them to be connected by an edge, we require that ...
Richard Ehrenborg, Sergey Kitaev, Einar Steingrımsson   +2 more
doaj   +1 more source

Immune checkpoint inhibitor‐induced eosinophilic fasciitis: A pharmacovigilance and EADV Task force study

Journal of the European Academy of Dermatology and Venereology, EarlyView.
A comprehensive retrospective analysis of 121 immune checkpoint inhibitor‐induced eosinophilic fasciitis cases, including clinical presentation, diagnostic features and treatment outcomes using data from the EADV Task Force ‘Dermatology for Cancer Patients’, two international pharmacovigilance databases and the current literature.
Tristan V. M. Bruijn, Alexandre O. Gérard, Maëlys Labat, Zoe Apalla, Wouter van Binsbergen, Dimitra Koumaki, Valerian Rivet, Frederic Dezoteux, Damien Giacchero, Michael R. Ardern‐Jones, Kara Heelan, Jesse P. Hirner, Ander Mayor, Mariette Labots, Markus V. Starink, Conny J. van der Laken, Vincent Sibaud, Yannick S. Elshot   +17 more
wiley   +1 more source

The Spectrum of de Bruijn and Kautz Graphs

European Journal of Combinatorics, 1998
The authors give a complete description of the spectrum of de Bruijn and Kautz graphs. Moreover, they give several applications of these results by deriving tight bounds on the expansion parameters of those graphs.
Charles Delorme, Jean-Pierre Tillich
openaire   +1 more source

How Open Standards for Person‐Centered Care Become Checklists Again in Regulatory Practice: Underlying Mechanisms Explained

Regulation &Governance, EarlyView.
ABSTRACT In health care regulation, open outcome‐oriented standards are used to provide flexibility for care organizations to determine how to deal with complex issues. What remains understudied is how this works out in practice. This paper studies how inspectors use open standards to regulate the complex issue of person‐centered care.
Mirjam Kalisvaart, Lieke Oldenhof, Roland Bal, Anne Margriet Pot   +3 more
wiley   +1 more source

Consumer Behavior Analysis in Digital Marketing Using AI and Big Data Analytics: A Narrative Review and Methodological Taxonomy

WIREs Data Mining and Knowledge Discovery, Volume 16, Issue 3, September 2026.
AI and Big Data in Consumer Behavior Analysis. ABSTRACT The rapid expansion of digital consumer data has challenged traditional approaches to understanding behavior in digital marketing. Existing reviews often focus on individual methods and give limited guidance on how analytical techniques compare or how they should be selected for specific marketing
Leonidas Theodorakopoulos, Alexandra Theodoropoulou   +1 more
wiley   +1 more source

A scalable distributed pipeline for reference-free variants calling

BMC Genomics
Background Precision medicine pipelines typically begin with variant calling to identify disease-related mutations for optimal treatment selection. Reference-free approaches assess variations in the genetic profiles of distinct individuals through the ...
Lorenzo Di Rocco, Umberto Ferraro Petrillo   +1 more
doaj   +1 more source