Results 261 to 270 of about 334,258 (285)

De novo assembly of a Chinese soybean genome

Science China Life Sciences, 2018
Soybean was domesticated in China and has become one of the most important oilseed crops. Due to bottlenecks in their introduction and dissemination, soybeans from different geographic areas exhibit extensive genetic diversity. Asia is the largest soybean market; therefore, a high-quality soybean reference genome from this area is critical for soybean ...
Yanting, Shen, Jing, Liu, Haiying, Geng, Jixiang, Zhang, Yucheng, Liu, Haikuan, Zhang, Shilai, Xing, Jianchang, Du, Shisong, Ma, Zhixi, Tian   +9 more
openaire   +2 more sources

Ra – Rapid de novo genome assembler

2017
Ra is a novel de novo genome assembler based on the Overlap-Layout-Consensus paradigm tailored for reads produced by third generation sequencing platforms. It integrates previously developed Minimap overlap (Li, 2016), Racon consensus (Vaser et al, 2017) tools and a newly developed layout module Rala into one package.
Vaser, Robert, Šikić, Mile
openaire   +1 more source

Approaches to DNA de novo Assembly

2013
DNA is the basic building block of all known life, accounting for all the diversities in nature. Determining the DNA of an individual organism is performed through a process called DNA sequencing. Although several different sequencing technologies do exist, they are limited and are able to acquire relatively short sequence reads.
Šikić, Mile, Sović, Ivan, Skala, Karolj   +2 more
openaire   +1 more source

Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm

Nature Methods, 2021
Haoyu Cheng, Xiaowen Feng, Haowen Zhang
exaly  

TransPi—a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly

Molecular Ecology Resources, 2022
Ramón E Rivera-Vicéns, Catalina A Garcia-Escudero, Nicola Conci   +2 more
exaly  

De Novo Genome Assembly

2023
openaire   +1 more source

Haplotype-resolved de novo assembly of a Tujia genome suggests the necessity for high-quality population-specific genome references

Cell Systems, 2022
Haiyi Lou, Yang Gao, Shuhua Xu
exaly  

A simple guide to de novo transcriptome assembly and annotation

Briefings in Bioinformatics, 2022
Venket Raghavan, Louis Kraft, Fantin Mesny   +2 more
exaly  

Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes

Nature Biotechnology, 2020
Kishwar Shafin, Trevor Pesout, Ryan Lorig-Roach   +2 more
exaly  

Unraveling the mechanism of de novo nucleosome assembly

Science Bulletin, 2023
Na, Yang, Zhenyu, Yu
openaire   +2 more sources