Results 161 to 170 of about 111,403 (262)

A new algorithm for de novo genome assembly [PDF]

, 2012
The enormous amount of short reads produced by next generation sequencing (NGS) techniques such as Roche/454, Illumina/Solexa and SOLiD sequencing opened the possibility of de novo genome assembly. Some of the de novo genome assemblers (e.g., Edena, SGA) use an overlap graph approach to assemble a genome, while others (e.g., ABySS and SOAPdenovo) use a
openaire  

De novo genome assembly of a Geomyid rodent, Botta's pocket gopher (Thomomys bottae bottae). [PDF]

J Hered
Voss ER, Escalona M, Kozak KM, Seligmann W, Fairbairn CW, Nguyen O, Marimuthu MPA, Conroy CJ, Patton JL, Bowie RCK, Nachman MW.   +10 more
europepmc   +1 more source

Comparing Transcriptomic Responses to Chemicals Across Six Species Using the EcoToxChip RNASeq Database

Environmental Toxicology and Chemistry, EarlyView.
Abstract The EcoToxChip project includes RNA‐sequencing data from experiments involving model (Japanese quail, fathead minnow, African clawed frog) and ecological (double‐crested cormorant, rainbow trout, northern leopard frog) species at multiple life stages (whole embryo and adult) exposed to eight chemicals of environmental concern known to perturb ...
Krittika Mittal, Jessica Ewald, Doug Crump, Jessica Head, Markus Hecker, Natacha Hogan, Jianguo Xia, Niladri Basu   +7 more
wiley   +1 more source

Geometric deep learning framework for de novo genome assembly. [PDF]

Genome Res
Vrček L, Bresson X, Laurent T, Schmitz M, Kawaguchi K, Šikić M.   +5 more
europepmc   +1 more source

Scalable and versatile container-based pipelines for de novo genome assembly and bacterial annotation. [PDF]

F1000Res, 2023
de Almeida FM, de Campos TA, Pappas GJ.
europepmc   +1 more source

Prior knowledge on context-driven DNA fragmentation probabilities can improve de novo genome assembly algorithms. [PDF]

BMC Bioinformatics
Pflughaupt P, Sahakyan AB.
europepmc   +1 more source

ntLink: A Toolkit for De Novo Genome Assembly Scaffolding and Mapping Using Long Reads. [PDF]

Curr Protoc, 2023
Coombe L, Warren RL, Wong J, Nikolic V, Birol I.   +4 more
europepmc   +1 more source

Cross‐protective effect of a multicomponent fusion protein vaccine during a natural episode of Streptococcus zooepidemicus respiratory disease in ponies

Equine Veterinary Journal, EarlyView.
Abstract Background Streptococcus equi subspecies zooepidemicus is a highly diverse opportunistic pathogen of horses, associated with respiratory disease and endometritis. Objectives To characterise S. zooepidemicus isolates recovered from young ponies during a natural episode of respiratory disease, and to determine if vaccination with Strangvac®, a ...
Romain Paillot, J. Richard Newton, Sonia Gonzalez Medina, Sara Frosth, Lars Frykberg, Margareta Flock, Bengt Guss, Jan‐Ingmar Flock, Andrew S. Waller   +8 more
wiley   +1 more source

Genome report: de novo genome assembly of the greater Bermuda land snail, Poecilozonites bermudensis (Mollusca: Gastropoda), confirms ancestral genome duplication. [PDF]

G3 (Bethesda)
Winingear S, Outerbridge M, Garcia G, Stone AC, Wilson MA, Polly PD.   +5 more
europepmc   +1 more source

Enhancing Optogenetics‐Based Cancer Therapy Via Nanotechnology

Exploration, EarlyView.
Nanotechnology enhances optogenetics‐based cancer therapy through improved delivery systems and non‐invasive optical regulation. It further enables precise and programmable control of optogenetic living therapeutics for localized antitumor responses.
Honggang Shen, Wenzhe Yi, Rongzhang Li, Shuangshuang Hu, Xindi Qian, Dan Yan, Qian Zou, Guanru Wang, Yaping Li   +8 more
wiley   +1 more source