Results 51 to 60 of about 60,554,138 (296)

De novo assembly of Euphorbia fischeriana root transcriptome identifies prostratin pathway related genes [PDF]

, 2011
Background Euphorbia fischeriana is an important medicinal plant found in Northeast China. The plant roots contain many medicinal compounds including 12-deoxyphorbol-13-acetate, commonly known as prostratin that is a phorbol ester from the tigliane ...
Barrero Roberto A, Roberto A Barrero, Bellgard Matthew I, Paula Moolhuijzen, Yang Yanfang, Bellgard, M.I., Qiu, D., Zhang Nan, Chapman, B., Keeble-Gagnère Gabriel, Zhang, N., Tang Qi, Qi Tang, Tang, Q., Barrero, R., Gabriel Keeble-Gagnère, Matthew I Bellgard, Moolhuijzen, Paula, Brett Chapman, Yanfang Yang, Moolhuijzen, P., Chapman Brett, Yang, Y., Bellgard, M., Moolhuijzen Paula, Barrero, R.A., Deyou Qiu, Nan Zhang, Keeble-Gagnère, G., Qiu Deyou   +29 more
core   +2 more sources

De novo assembly and annotation of the Ganoderma australe genome

Genomics, 2020
The Ganoderma genus represents clear biotechnological potential, due to the large quantity of molecules with biological activity that could be explored. However, available information regarding the biotechnological importance of species within Ganoderma, other than G. lucidum, is quite limited.
Daniel, Agudelo-Valencia, Paula Tatiana, Uribe-Echeverry, John Fredy, Betancur-Pérez   +2 more
openaire   +2 more sources

The sequence and de novo assembly of the giant panda genome [PDF]

Nature, 2009
Using next-generation sequencing technology alone, we have successfully generated and assembled a draft sequence of the giant panda genome. The assembled contigs (2.25 gigabases (Gb)) cover approximately 94% of the whole genome, and the remaining gaps (0.05 Gb) seem to contain carnivore-specific repeats and tandem repeats.
Li, Ruiqiang, Fan, Wei, Tian, Geng, Zhu, Hongmei, He, Lin, Cai, Jing, Huang, Quanfei, Cai, Qingle, Li, Bo, Bai, Yinqi, Zhang, Zhihe, Zhang, Yaping, Wang, Wen, Li, Jun, Wei, Fuwen, Li, Heng, Jian, Min, Li, Jianwen, Zhang, Zhaolei, Nielsen, Rasmus, Li, Dawei, Gu, Wanjun, Yang, Zhentao, Xuan, Zhaoling, Ryder, Oliver A., Leung, Frederick Chi-Ching, Zhou, Yan, Cao, Jianjun, Sun, Xiao, Fu, Yonggui, Fang, Xiaodong, Guo, Xiaosen, Wang, Bo, Hou, Rong, Shen, Fujun, Mu, Bo, Ni, Peixiang, Lin, Runmao, Qian, Wubin, Wang, Guodong, Yu, Chang, Nie, Wenhui, Wang, Jinhuan, Wu, Zhigang, Liang, Huiqing, Min, Jiumeng, Wu, Qi, Cheng, Shifeng, Ruan, Jue, Wang, Mingwei, Shi, Zhongbin, Wen, Ming, Liu, Binghang, Ren, Xiaoli, Zheng, Huisong, Dong, Dong, Cook, Kathleen, Shan, Gao, Zhang, Hao, Kosiol, Carolin, Xie, Xueying, Lu, Zuhong, Zheng, Hancheng, Li, Yingrui, Steiner, Cynthia C., Lam, Tommy Tsan-Yuk, Lin, Siyuan, Zhang, Qinghui, Li, Guoqing, Tian, Jing, Gong, Timing, Liu, Hongde, Zhang, Dejin, Fang, Lin, Ye, Chen, Zhang, Juanbin, Hu, Wenbo, Xu, Anlong, Ren, Yuanyuan, Zhang, Guojie, Bruford, Michael W., Li, Qibin, Ma, Lijia, Guo, Yiran, An, Na, Hu, Yujie, Zheng, Yang, Shi, Yongyong, Li, Zhiqiang, Liu, Qing, Chen, Yanling, Zhao, Jing, Qu, Ning, Zhao, Shancen, Tian, Feng, Wang, Xiaoling, Wang, Haiyin, Xu, Lizhi, Liu, Xiao, Vinar, Tomas, Wang, Yajun, Lam, Tak-Wah, Yiu, Siu-Ming, Liu, Shiping, Zhang, Hemin, Li, Desheng, Huang, Yan, Wang, Xia, Yang, Guohua, Jiang, Zhi, Wang, Junyi, Qin, Nan, Li, Li, Li, Jingxiang, Bolund, Lars, Kristiansen, Karsten, Wong, Gane Ka-Shu, Olson, Maynard, Zhang, Xiuqing, Li, Songgang, Yang, Huanming, Wang, Jian, Wang, Jun   +122 more
openaire   +6 more sources

A practical comparison of the next-generation sequencing platform and assemblers using yeast genome

Life Science Alliance, 2023
This research analyzes the general and optimal de novo yeast assembly pipeline using the repetitive yeast genome assembly by benchmarking four different sequencing platforms and seven assembly programs.
Min-Seung Jeon, Da Min Jeong, Huijeong Doh, Hyun Ah Kang, Hyungtaek Jung, Seong-il Eyun   +5 more
doaj   +1 more source

De novo assembly and annotation of the singing mouse genome

BMC Genomics, 2022
Abstract Background Developing genomic resources for a diverse range of species is an important step towards understanding the mechanisms underlying complex traits. Specifically, organisms that exhibit unique and accessible phenotypes-of-interest allow researchers to ...
Samantha K. Smith, Paul W. Frazel, Alireza Khodadadi-Jamayran, Paul Zappile, Christian Marier, Mariam Okhovat, Stuart Brown, Michael A. Long, Adriana Heguy, Steven M Phelps   +9 more
openaire   +3 more sources

Draft genome sequence of the earliest Cronobacter sakazakii sequence type 4 strain, NCIMB 8272 [PDF]

, 2013
The Cronobacter sakazakii clonal lineage defined as sequence type 4 (ST4) is associated with severe cases of neonatal meningitis and persistence in powdered infant formula.
Forsythe, S, Hariri, S, Farbos, A, McNally, A, Moore, K, Paszckiewicz, K, Masood, N, Dickins, B   +7 more
core   +1 more source

Complement Genome Annotation Lift Over Using a Weighted Sequence Alignment Strategy

Frontiers in Genetics, 2019
With the broad application of high-throughput sequencing, more whole-genome resequencing data and de novo assemblies of natural populations are becoming available.
Baoxing Song, Baoxing Song, Baoxing Song, Qing Sang, Hai Wang, Huimin Pei, XiangChao Gan, Fen Wang   +7 more
doaj   +1 more source

A De Novo Genome Sequence Assembly of the Arabidopsis thaliana Accession Niederzenz-1 Displays Presence/Absence Variation and Strong Synteny. [PDF]

PLoS ONE, 2016
Arabidopsis thaliana is the most important model organism for fundamental plant biology. The genome diversity of different accessions of this species has been intensively studied, for example in the 1001 genome project which led to the identification of ...
Boas Pucker, Daniela Holtgräwe, Thomas Rosleff Sörensen, Ralf Stracke, Prisca Viehöver, Bernd Weisshaar   +5 more
doaj   +1 more source

De novo genome assembly of Cercospora beticola for microsatellite marker development and validation

, 2017
Cercospora leaf spot caused by Cercospora beticola is a significant threat to the production of sugar and table beet worldwide. A de novo genome assembly of C.
Melvin D. Bolton, Kikkert, Julie R., Julie R. Kikkert, Bolton, Melvin D., Secor, Gary A., Niloofar Vaghefi, Vaghefi, Niloofar, Gary A. Secor, Hanson, Linda E., Linda E. Hanson, Sarah J. Pethybridge, Pethybridge, Sarah J.   +11 more
core   +1 more source

State of the art de novo assembly of human genomes from massively parallel sequencing data

Human Genomics, 2010
Recent studies in human genomes have demonstrated the use of de novo assemblies to identify genetic variations that are difficult for mapping-based approaches.
Li Yingrui, Hu Yujie, Bolund Lars, Wang Jun   +3 more
doaj   +1 more source