Results 61 to 70 of about 208,933 (266)

Edge-weighted anonymity for directed network graph

Intelligent and Converged Networks
In social networks, weighted graph anonymity is gaining more and more attention. But fan-following graphs like Twitter’s are not protected by anonymity.
Yanze Huang, Jianghong Lin, Wei Li, Jiaru Wang, Limei Lin   +4 more
doaj   +1 more source

Cell geometry and membrane protein crowding constrain Escherichia coli growth rate, overflow metabolism, respiration, and maintenance energy

FEBS Letters, EarlyView.
The physical dimensions and shape of bacterial cells define the surface area available to acquire nutrients and the volume available for synthesizing proteins and DNA. Here, we use computational systems biology to decode the importance of cell geometry as a major determinant of prokaryotic phenotype, including growth rate and metabolic efficiency. This
Ross P. Carlson, Tomáš Gedeon, Mauricio Garcia Benitez, Campbell Putnam, William R. Harcombe, Radhakrishnan Mahadevan, Ashley E. Beck   +6 more
wiley   +1 more source

Extending Undirected Graph Techniques to Directed Graphs via Category Theory

Mathematics
We use Category Theory to construct a ‘bridge’ relating directed graphs with undirected graphs, such that the notion of direction is preserved. Specifically, we provide an isomorphism between the category of simple directed graphs and a category we call ‘
Sebastian Pardo-Guerra, Vivek Kurien George, Vikash Morar, Joshua Roldan, Gabriel Alex Silva   +4 more
doaj   +1 more source

Fixed Points of Set Valued Mappings in Terms of Start Point on a Metric Space Endowed with a Directed Graph

Mathematics, 2017
In the present article, we introduce the new concept of start point in a directed graph and provide the characterizations required for a directed graph to have a start point.
Murchana Neog, Pradip Debnath
doaj   +1 more source

Packing and Covering a Given Directed Graph in a Directed Graph

SIAM Journal on Discrete Mathematics
For every fixed $k \ge 4$, it is proved that if an $n$-vertex directed graph has at most $t$ pairwise arc-disjoint directed $k$-cycles, then there exists a set of at most $\frac{2}{3}kt+ o(n^2)$ arcs that meets all directed $k$-cycles and that the set of $k$-cycles admits a fractional cover of value at most $\frac{2}{3}kt$.
openaire   +3 more sources

Salmonella lipopolysaccharide‐containing supported lipid bilayers as platforms to study bacteriophage interactions

FEBS Letters, EarlyView.
We present robust protocols for the preparation of supported lipid bilayers (SLBs) incorporating either Salmonella smooth LPS or outer membrane vesicles (OMVs). We use a combination of quartz crystal microbalance with dissipation (QCM‐D) and fluorescence microscopy to both characterize the SLBs of various compositions and to probe their interactions ...
Hudson P. Pace, Alyssa Borges, Charles Arnaud, Tove Karlsson, Nina K. Bröker, Stefanie Barbirz, Marta Bally   +6 more
wiley   +1 more source

A Multilevel Algorithm for Force-Directed Graph-Drawing

Journal of Graph Algorithms and Applications, 2003
We describe a heuristic method for drawing graphs which uses a multilevel framework combined with a force-directed placement algorithm. The multilevel technique matches and coalesces pairs of adjacent vertices to define a new graph and is repeated ...
Chris Walshaw
doaj   +1 more source

From mice to humans—divergent strategies for intestinal homeostasis and regeneration

FEBS Letters, EarlyView.
Recent advances such as organoid genome editing, xenotransplantation, imaging, and whole‐genome sequencing have enabled direct studies of human intestinal stem cells (ISCs). These studies reveal species‐specific features, including slower ISC proliferation, distinct injury responses, slower somatic mutation accumulation in humans, and an inverse ...
Keiko Ishikawa, Shinya Sugimoto, Toshiro Sato   +2 more
wiley   +1 more source

Modelling stem cell differentiation related processes—A practical overview for biologists

FEBS Letters, EarlyView.
Stem cell differentiation is complex and difficult to control experimentally. This review introduces suitable computational modelling approaches that can support stem cell research, from mechanistic ODE and abstract models to multiscale and deep learning methods.
Ricco Zeegelaar, Xinqi Yan, Lucas F. Jansen Klomp, Stefano Schivo, Janine N. Post   +4 more
wiley   +1 more source

Design and analysis strategies for robust microbiome ageing research

FEBS Letters, EarlyView.
The gut microbiome changes with age and associates with age‐related morbidity and mortality, establishing it as a potential biomarker and intervention target for ageing. Realising this potential requires methodological rigour, yet distinguishing biological signals from methodological artefacts remains challenging across cohorts. This review provides an
Mark Olenik, İsmail Güderer, Yi Wang, Tayyaba Alvi, Prasoon Pandey, Handan Melike Dönertaş   +5 more
wiley   +1 more source