Identification of bacteria and fungi responsible for litter decomposition in desert steppes via combined DNA stable isotope probing [PDF]
Frontiers in MicrobiologyIntroductionSoil microorganisms play crucial roles in determining the fate of litter in desert steppes because their activities constitute a major component of the global carbon (C) cycle.
He Ye +13 more
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Characterization and DNA Stable-Isotope Probing of Methanotrophic Bioaerosols [PDF]
Microbiology Spectrum, 2022 The growth and activity of bacteria have been extensively studied in nearly every environment on Earth, but there have been limited studies focusing on the air.
Kevin P. Dillon +5 more
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Anammox bacterial abundance and diversity in different temperatures of purple paddy soils by 13C-DNA stable-isotope probing combined with high-throughput sequencing [PDF]
Frontiers in Microbiology, 2023 IntroductionAnaerobic ammonium oxidation (anammox) plays a vital role in the global nitrogen cycle by oxidizing ammonium to nitrogen under anaerobic environments.
Zijie Yu +6 more
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Novel Phenanthrene-Degrading Bacteria Identified by DNA-Stable Isotope Probing. [PDF]
PLoS ONE, 2015 Microorganisms responsible for the degradation of phenanthrene in a clean forest soil sample were identified by DNA-based stable isotope probing (SIP).
Longfei Jiang +4 more
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DNA stable isotope probing reveals hidden microbial carbon processing pathways in agricultural soils [PDF]
Applied and Environmental MicrobiologyAgricultural soil management plays a key role in driving the microbial communities responsible for soil carbon cycling, yet mechanistic understanding of these effects has been limited by the inability to directly observe microbial activity in situ ...
Malak M. Tfaily
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Virome DNA stable isotope probing reveals diverse active soil virus communities across ecosystem contexts [PDF]
mSystemsViruses are increasingly recognized as important players in soil ecosystems, but the active lytic virus populations that influence microbe-mediated terrestrial ecosystem processes remain mostly uncharacterized.
Ernest D. Osburn, Minjae Kim
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Application of GelGreen™ in Cesium Chloride Density Gradients for DNA-Stable Isotope Probing Experiments. [PDF]
PLoS ONE, 2017 In this study, GelGreen™ was investigated as a replacement for SYBR® Safe to stain DNA in cesium chloride (CsCl) density gradients for DNA-stable isotope probing (SIP) experiments.
Jingfeng Gao +6 more
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Environment International, 2019 Increasing introduction of antibiotic residues from humans and animal farming into the environment impacts the functioning of natural ecosystems and significantly contributes to the propagation of antibiotic resistance. Microbial degradation is the major
Wei-Ying Ouyang +3 more
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Ammonium-Generating Microbial Consortia in Paddy Soil Revealed by DNA-Stable Isotope Probing and Metatranscriptomics [PDF]
MicroorganismsRice paddy fields are sustainable agricultural systems as soil microorganisms help maintain nitrogen fertility through generating ammonium. In these soils, dissimilatory nitrate reduction to ammonium (DNRA), nitrogen fixation, and denitrification are ...
Chao-Nan Wang, Yoko Masuda, Keishi Senoo
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DNA-Stable Isotope Probing Shotgun Metagenomics Reveals the Resilience of Active Microbial Communities to Biochar Amendment in Oxisol Soil [PDF]
Frontiers in Microbiology, 2020 The functions and interactions of individual microbial populations and their genes in agricultural soils amended with biochar remain elusive but are crucial for a deeper understanding of nutrient cycling and carbon (C) sequestration.
Julian Yu +9 more
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