Characterization and DNA Stable-Isotope Probing of Methanotrophic Bioaerosols [PDF]
Microbiology Spectrum, 2022 The growth and activity of bacteria have been extensively studied in nearly every environment on Earth, but there have been limited studies focusing on the air.
Kevin P. Dillon +5 more
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Simulating metagenomic stable isotope probing datasets with MetaSIPSim [PDF]
BMC Bioinformatics, 2020 Background DNA-stable isotope probing (DNA-SIP) links microorganisms to their in-situ function in diverse environmental samples. Combining DNA-SIP and metagenomics (metagenomic-SIP) allows us to link genomes from complex communities to their specific ...
Samuel E. Barnett, Daniel H. Buckley
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A standardized quantitative analysis strategy for stable isotope probing metagenomics [PDF]
mSystems, 2023 Stable isotope probing (SIP) facilitates culture-independent identification of active microbial populations within complex ecosystems through isotopic enrichment of nucleic acids.
Dariia Vyshenska +16 more
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Advances and perspectives of using stable isotope probing (SIP)-based technologies in contaminant biodegradation [PDF]
Water Research X, 2023 Stable isotope probing (SIP) is a powerful tool to study microbial community structure and function in both nature and engineered environments. Coupling with advanced genomics and other techniques, SIP studies have generated substantial information to ...
Jinha Kim +3 more
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A putatively new family of alphaproteobacterial chloromethane degraders from a deciduous forest soil revealed by stable isotope probing and metagenomics [PDF]
Environmental Microbiome, 2022 Background Chloromethane (CH3Cl) is the most abundant halogenated organic compound in the atmosphere and substantially responsible for the destruction of the stratospheric ozone layer.
Eileen Kröber +4 more
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Quantitative stable isotope probing (qSIP)-informed metagenomics identifies viruses infecting chemoautotrophs [PDF]
Nature CommunicationsAquatic environments absorb ~2.5 gigatonnes of atmospheric carbon each year1, more than the carbon stored in the atmosphere, soils, and all biomass combined.
Elaine Luo +7 more
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Environment International, 2019 Increasing introduction of antibiotic residues from humans and animal farming into the environment impacts the functioning of natural ecosystems and significantly contributes to the propagation of antibiotic resistance. Microbial degradation is the major
Wei-Ying Ouyang +3 more
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Genomic Features Predict Bacterial Life History Strategies in Soil, as Identified by Metagenomic Stable Isotope Probing [PDF]
mBio, 2023 Bacteria catalyze the formation and destruction of soil organic matter, but the bacterial dynamics in soil that govern carbon (C) cycling are not well understood.
Samuel E. Barnett +4 more
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Revealing taxonomy, activity, and substrate assimilation in mixed bacterial communities by GroEL-proteotyping-based stable isotope probing [PDF]
iScienceSummary: Protein-based stable isotope probing (protein-SIP) can link microbial taxa to substrate assimilation. Traditionally, protein-SIP requires a sample-specific metagenome-derived database for samples with unknown composition. Here, we describe GroEL-
Simon Klaes +4 more
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Raman Stable Isotope Probing of Bacteria in Visible and Deep UV-Ranges [PDF]
Life, 2021 Raman stable isotope probing (Raman-SIP) is an excellent technique that can be used to access the overall metabolism of microorganisms. Recent studies have mainly used an excitation wavelength in the visible range to characterize isotopically labeled ...
Georgette Azemtsop Matanfack +3 more
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