Results 11 to 20 of about 7,066 (236)

Stable Isotope Probing Identifies Bacterioplankton Lineages Capable of Utilizing Dissolved Organic Matter Across a Range of Bioavailability [PDF]

open access: yesFrontiers in Microbiology, 2020
Bacterioplankton consume about half of the dissolved organic matter (DOM) produced by phytoplankton. DOM released from phytoplankton consists of a myriad of compounds that span a range of biological reactivity from labile to recalcitrant.
Shuting Liu   +11 more
doaj   +2 more sources

Dead bacterial biomass-assimilating bacterial populations in compost revealed by high-sensitivity stable isotope probing

open access: yesEnvironment International, 2019
Pathogens are known to survive in compost and to regrow under the influence of certain factors, such as moisture content, temperature and nutrient availability. Dead biomass, by providing available nutrients, is a factor that may affect pathogen regrowth.
Dai Hanajima, Tomo Aoyagi, Tomoyuki Hori
doaj   +3 more sources

Single-cell stable isotope probing in microbial ecology. [PDF]

open access: yesISME Commun, 2022
Abstract Environmental and host-associated microbiomes are typically diverse assemblages of organisms performing myriad activities and engaging in a network of interactions that play out in spatially structured contexts. As the sum of these activities and interactions give rise to overall microbiome function, with important consequences ...
Alcolombri U   +3 more
europepmc   +6 more sources

Bacterial Consumption of T4 Phages

open access: yesMicroorganisms, 2021
The bacterial consumption of viruses not been reported on as of yet even though bacteria feed on almost anything. Viruses are widely distributed but have no acknowledged active biocontrol.
Jean-Jacques Godon   +6 more
doaj   +1 more source

HTSSIP: An R package for analysis of high throughput sequencing data from nucleic acid stable isotope probing (SIP) experiments. [PDF]

open access: yesPLoS ONE, 2018
Combining high throughput sequencing with stable isotope probing (HTS-SIP) is a powerful method for mapping in situ metabolic processes to thousands of microbial taxa.
Nicholas D Youngblut   +2 more
doaj   +1 more source

RNA-Stable Isotope Probing v6 [PDF]

open access: yes, 2021
The following protocol describes how to perform an RNA-Stable Isotope Probing experiment. The scope of this protocol only covers the parts involving separating labelled RNA from unlabelled RNA using ultracentrifugation in a caesium trifluoroacetate density gradient and downstream quantification to evaluate whether the labelling and separation of the ...
Roey Angel, Eva Petrova, Ana Lara
openaire   +1 more source

Energetically exploiting lignocellulose-rich residues in anaerobic digestion technologies: from bioreactors to proteogenomics

open access: yesBiotechnology for Biofuels and Bioproducts, 2023
The biogas produced through anaerobic digestion (AD) of renewable feedstocks is one of the promising alternatives to replace fossil-derived energy. Even though lignocellulosic biomass is the most abundant biomass on earth, only a small fraction is being ...
Jan Struckmann Poulsen   +3 more
doaj   +1 more source

Impact of plants on the diversity and activity of methylotrophs in soil

open access: yesMicrobiome, 2020
Background Methanol is the second most abundant volatile organic compound in the atmosphere, with the majority produced as a metabolic by-product during plant growth.
Michael C. Macey   +3 more
doaj   +1 more source

DNA Stable-Isotope Probing (DNA-SIP) [PDF]

open access: yesJournal of Visualized Experiments, 2010
DNA stable-isotope probing (DNA-SIP) is a powerful technique for identifying active microorganisms that assimilate particular carbon substrates and nutrients into cellular biomass. As such, this cultivation-independent technique has been an important methodology for assigning metabolic function to the diverse communities inhabiting a wide range of ...
Eric A, Dunford, Josh D, Neufeld
openaire   +2 more sources

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