Results 11 to 20 of about 1,155,163 (294)
Classifying Coding DNA with Nucleotide Statistics
Bioinformatics and Biology Insights, 2009 In this report, we compared the success rate of classification of coding sequences (CDS) vs. introns by Codon Structure Factor (CSF) and by a method that we called Universal Feature Method (UFM).
Nicolas Carels, Diego Frías
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Fitting Markov property to genetic sequences
Lietuvos Matematikos Rinkinys, 2023 In this paper DNA sequents are modelled as discrete-state Markov chains. Statistical data is presented in contingency tables form. The generalized logit model is used to test the first-order Markov property for all coding and non-coding subsequences of ...
Jurgita Židanavičiūtė +1 more
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Investigations of oligonucleotide usage variance within and between prokaryotes. [PDF]
PLoS Computational Biology, 2008 Oligonucleotide usage in archaeal and bacterial genomes can be linked to a number of properties, including codon usage (trinucleotides), DNA base-stacking energy (dinucleotides), and DNA structural conformation (di- to tetranucleotides).
Jon Bohlin +2 more
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Coding for Optimized Writing Rate in DNA Storage [PDF]
, 2020 A method for encoding information in DNA sequences is described. The method is based on the precisionresolution framework, and is aimed to work in conjunction with a recently suggested terminator-free template independent DNA synthesis method.
Bruck, Jehoshua +3 more
core +1 more source
Distinguish Coding And Noncoding Sequences In A Complete Genome Using Fourier Transform [PDF]
, 2007 A Fourier transform method is proposed to distinguish coding and non-coding sequences in a complete genome based on a number sequence representation of the DNA sequence proposed in our previous paper (Zhou et al., J. Theor. Biol.
Anh, Vo +3 more
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Non-coding RNAs and epigenome: de novo DNA methylation, allelic exclusion and X-inactivation [PDF]
The Ukrainian Biochemical Journal, 2013 Non-coding RNAs are widespread class of cell RNAs. They participate in many important processes in cells – signaling, posttranscriptional silencing, protein biosynthesis, splicing, maintenance of genome stability, telomere lengthening, X-inactivation ...
V. A. Halytskiy, S. V. Komisarenko
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DanQ: a hybrid convolutional and recurrent deep neural network for quantifying the function of DNA sequences. [PDF]
, 2016 Modeling the properties and functions of DNA sequences is an important, but challenging task in the broad field of genomics. This task is particularly difficult for non-coding DNA, the vast majority of which is still poorly understood in terms of ...
Quang, Daniel, Xie, Xiaohui
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Universal Features for the Classification of Coding and Non-Coding DNA Sequences
Bioinformatics and Biology Insights, 2009 In this report, we revisited simple features that allow the classification of coding sequences (CDS) from non-coding DNA. The spectrum of codon usage of our sequence sample is large and suggests that these features are universal.
Nicolas Carels +2 more
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BRICS Report Series, 1998 We discuss a model for the evolutionary distance between two coding DNA sequences which specializes to the DNA/protein model proposed in Hein [3]. We discuss the DNA/protein model in details and present a quadratic time algorithm that computes an optimal alignment of two coding DNA sequences in the model under the assumption of affine gap cost.
Christian N. S. Pedersen +2 more
openaire +2 more sources
Specific antigen of tumor cell transformed by DNA extracted from SV-40 virus [PDF]
, 1967 In the immunofluorescent study it has been revealed that rabbit sera immunized with transformed cells induced by SV-40 DNA, produce circulating antibody capable of re:lcting with intranuclear antigens synthesized by SV-40 complyte virus transforming ...
Grace, James T. +5 more
core +1 more source