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DNA sequence analysis and the computer
Biochemical Society Transactions, 1984Analysis of DNA sequences has greatly aided our understanding of molecular biology and genetics. Nucleotide sequences have provided a wealth of information about gene structure and function. In addition to revealing the primary structure of genes, sequencing has uncovered the phenomena of overlapping genes, segmented genes, pseudogenes and a different ...
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A Markov analysis of DNA sequences
Journal of Theoretical Biology, 1983We present a model by which we look at the DNA sequence as a Markov process. It has been suggested by several workers that some basic biological or chemical features of nucleic acids stand behind the frequencies of dinucleotides (doublets) in these chains.
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Visualization and analysis of DNA sequences using DNA walks
Journal of the Franklin Institute, 2004zbMATH Open Web Interface contents unavailable due to conflicting licenses.
John A. Berger +3 more
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Statistical Analysis of DNA Sequences
JNCI Journal of the National Cancer Institute, 1988Developments in the statistical analysis of DNA sequence data since 1984 are reviewed. Mathematical methods employing dynamic programming or incorporating Markov chain theory have been developed to search sequences for regions of similarity and to align sequences.
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2018
Among various biological data, DNA sequence is doubtlessly a fundamental datum. By obtaining particular DNA sequence data and analyzing, biologists get to understand life science more precisely. This chapter is an overview of DNA sequencing technology and its data analysis methods, providing information about DNA sequencing, several different methods ...
Keyi, Long, Lei, Cai, Lin, He
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Among various biological data, DNA sequence is doubtlessly a fundamental datum. By obtaining particular DNA sequence data and analyzing, biologists get to understand life science more precisely. This chapter is an overview of DNA sequencing technology and its data analysis methods, providing information about DNA sequencing, several different methods ...
Keyi, Long, Lei, Cai, Lin, He
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Computer support of DNA sequence analysis
Computer Programs in Biomedicine, 1981The paper describes a package of APL-programs suited for the management and the analysis of DNA sequence data. Most of the application programs are related to experimental work in a DNA sequencing laboratory: Search for overlapping DNA fragments to construct complete DNA sequences; search for restriction sites; computing fragment patterns when cutting ...
G, Osterburg, R, Sommer
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Recent Advances in DNA Sequence Analysi
CRC Critical Reviews in Biochemistry, 1975(1975). Recent Advances in DNA Sequence Analysi. CRC Critical Reviews in Biochemistry: Vol. 2, No. 4, pp. 455-512.
Ray Wu +3 more
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Mitochondrial DNA sequence analysis in Sicily
American Journal of Human Biology, 2001AbstractThis study reports data on the sequences of the first hypervariable segment of a sample of the Sicilian population from Alia (Palermo, Italy). The results show the presence of 32 different haplotypes in the 49 individuals examined. The average number of pairwise nucleotide differences was 4.04, i.e., 1.17% per nucleotide.
Vona G +5 more
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Web Services for DNA Sequence Analysis
16th International Workshop on Database and Expert Systems Applications (DEXA'05), 2006The standardized interface to sequence analysis tools is highly desirable to integrate bioinformatics applications. Currently existing software packages and programming toolkits (BioPerl, BioJava, etc.) used by bioinformaticians for DNA sequence analysis have limited support for exchanging and reusing data.
Denis Shestakov, Tapio Salakoski
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The Preferential Mode Analysis of DNA Sequence
Journal of Theoretical Biology, 1997After reviewing approaches to the nucleotide correlation of DNA sequences the preferential mode analysis method is emphasized and discussed in detail. The preferred modes and poor modes in coding regions, as well as in introns, 5'-caps and 3'-tails are found through the statistical analysis of sequence data of all kinds of species in GenBank.
L, Luo, F, Ji
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