Results 31 to 40 of about 3,728,691 (365)

DNA Sequences at a Glance

PLoS ONE, 2013
Data summarization and triage is one of the current top challenges in visual analytics. The goal is to let users visually inspect large data sets and examine or request data with particular characteristics. The need for summarization and visual analytics is also felt when dealing with digital representations of DNA sequences.
Armando J. Pinho, Diogo Pratas, Paulo J. S. G. Ferreira, Sara P. Garcia   +3 more
openaire   +5 more sources

Genome description of Phlebia radiata 79 with comparative genomics analysis on lignocellulose decomposition machinery of phlebioid fungi

BMC Genomics, 2019
Background The white rot fungus Phlebia radiata, a type species of the genus Phlebia, is an efficient decomposer of plant cell wall polysaccharides, modifier of softwood and hardwood lignin, and is able to produce ethanol from various waste ...
Mari Mäkinen, Jaana Kuuskeri, Pia Laine, Olli-Pekka Smolander, Andriy Kovalchuk, Zhen Zeng, Fred O. Asiegbu, Lars Paulin, Petri Auvinen, Taina Lundell   +9 more
doaj   +1 more source

Divergent northern and southern populations and demographic history of the pearl oyster in the western Pacific revealed with genomic SNPs

Evolutionary Applications, 2020
In the open ocean without terrain boundaries, marine invertebrates with pelagic larvae can migrate long distances using ocean currents, suggesting reduced genetic diversification.
Takeshi Takeuchi, Tetsuji Masaoka, Hideo Aoki, Ryo Koyanagi, Manabu Fujie, Noriyuki Satoh   +5 more
doaj   +1 more source

Comparative genomics of four strains of the edible brown alga, Cladosiphon okamuranus

BMC Genomics, 2020
Background The brown alga, Cladosiphon okamuranus (Okinawa mozuku), is one of the most important edible seaweeds, and it is cultivated for market primarily in Okinawa, Japan.
Koki Nishitsuji, Asuka Arimoto, Yoshitaka Yonashiro, Kanako Hisata, Manabu Fujie, Mayumi Kawamitsu, Eiichi Shoguchi, Noriyuki Satoh   +7 more
doaj   +1 more source

Fast DNA sequencing

Medical Hypotheses, 2000
A method for fast nucleotide sequencing is described. It is based in the selection of well-known small oligomers able to be hybridized with the unknown target. The selected oligomers are afterwards ordered following a simple statistical approach. The use of capillary electrophoresis for the analysis is emphasized.
Figureau, A., Soto, M.A., Toha, J.
openaire   +5 more sources

DNA Sequencing

Recombinant DNA Principles and Methodologies, 2021
In order to complete the Human Genome Project, geneticists were required to sequence DNA. This process determines the correct order of DNA strands, which are made from four bases: adenine (A), guanine (G), cytosine ©, and thymine (T).
Maurice A. Kashdan, Phillip T. Moen, Venigalla B. Rao, Bachoti S. Rao   +3 more
semanticscholar   +3 more sources

CNVkit: Genome-Wide Copy Number Detection and Visualization from Targeted DNA Sequencing

PLoS Comput. Biol., 2016
Germline copy number variants (CNVs) and somatic copy number alterations (SCNAs) are of significant importance in syndromic conditions and cancer. Massively parallel sequencing is increasingly used to infer copy number information from variations in the ...
Talevich, Eric, Shain, A. Hunter, Botton
semanticscholar   +1 more source

Highly accurate long reads are crucial for realizing the potential of biodiversity genomics

BMC Genomics, 2023
Background Generating the most contiguous, accurate genome assemblies given available sequencing technologies is a long-standing challenge in genome science.
Scott Hotaling, Edward R. Wilcox, Jacqueline Heckenhauer, Russell J. Stewart, Paul B. Frandsen   +4 more
doaj   +1 more source

Gene-specific quantification of nascent transcription following targeted degradation of endogenous proteins in cultured cells

STAR Protocols, 2021
Summary: Genome-wide nuclear run-ons are a powerful way to determine the impact of a perturbation such as transcription factor degradation on transcriptional patterns.
Alissa D. Guarnaccia, April M. Weissmiller, William P. Tansey   +2 more
doaj   +1 more source

Bisulfite Sequencing of DNA [PDF]

Current Protocols in Molecular Biology, 2010
AbstractExact positions of 5‐methylcytosine (m5C) on a single strand of DNA can be determined by bisulfite genomic sequencing (BGS). Treatment with bisulfite ion preferentially deaminates unmethylated cytosines, which are then converted to uracil upon desulfonation.
Russell P. Darst, Michael P. Kladde, Lingbao Ai, Kevin D. Brown, Carolina E. Pardo   +4 more
openaire   +3 more sources