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EST-SSRs in citrus: Features, polymorphism and mappability [PDF]
, 2008 Luro, François +10 more
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New analysis of EST-SSR distribution and development of EST-SSR markers in Salvia miltiorrhiza
China Journal of Chinese Materia Medica, 2011OBJECTIVE To establish the new EST-SSR markers for analyzing the genetic variation of different population of Salvia miltiorrhiza. METHOD It was dealt with ESTs newly downloaded from Genbank and that of acquired from HMPL lab EGassembler software, and then carried out SSR loci search and SSR type analysis by SSRIT software.
Xueyong, Wang +5 more
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Transferability of cereal EST-SSR markers to ryegrass
Genome, 2009A large number of expressed sequence tags (ESTs) in public databases have provided an opportunity for the systematic development of simple sequence repeat (SSR) markers. EST-SSRs derived from conserved coding sequences show considerable cross-species transferability in related species.
Sung-Chur, Sim +4 more
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Analysis and transferability of EST-SSR markers in grapes
Acta Horticulturae, 2009Recent increase in the availability of expressed sequence tag (EST) data has facilitated the development of microsatellite markers in a number of plant species, including grapevine. We identified 23 ESTs containing perfect simple sequence repeats (EST-SSR) of di-, tri-, tetra-, and penta-nucleotide type from 506 expressed sequence tags (EST ...
Akkak A +5 more
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Development of ESTs and data mining of pineapple EST-SSRs
Molecular Biology Reports, 2011Improving the quality of the non-climacteric fruit, pineapple, is possible with information on the expression of genes that occur during the process of fruit ripening. This can be made known though the generation of partial mRNA transcript sequences known as expressed sequence tags (ESTs).
W D, Ong, C L Y, Voo, S V, Kumar
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EST-SSR markers for gerbera (Gerbera hybrida)
Molecular Breeding, 2010Gerbera (Gerbera hybrida) is one of the most important cut and pot flowers marketed worldwide. Few molecular markers and no SSR (simple sequence repeat) markers were available for gerbera breeding and genetic studies. Through in silico analysis of 8,670 unigene sequences assembled from 16,998 gerbera expressed sequence tags (ESTs) in the GenBank, we ...
Li Gong, Zhanao Deng
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New Polymorphic EST-SSR Markers in Sugarcane
Sugar Tech, 2012New polymorphic SSR markers in sugarcane has potential usefulness to studies genetic diversity, genetic mapping, DNA fingerprinting and determination offspring as true hybrids, selfing or contaminant in germplasm from breeding program. SSR markers can be obtained in several ways, and the search for SSR-EST sequences an alternative with significant ...
Dennis Crystian Silva +5 more
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EST-SSRs for Genetic Mapping in Alfalfa
2006Several genetic maps of alfalfa have been published, both at the diploid (Medicago sativa subsp. coerulea) and tetraploid (Medicago sativa L.) levels. These maps have been constructed primarily with RFLP and RAPD markers, and have not been integrated into a single, reference map.
Mary Sledge, Ian Ray, M. A. Rouf Mian
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