Optimization of sequence alignment for simple sequence repeat regions [PDF]
BMC Research Notes, 2011 Background Microsatellites, or simple sequence repeats (SSRs), are tandemly repeated DNA sequences, including tandem copies of specific sequences no longer than six bases, that are distributed in the genome.
Ogbonnaya Francis C +2 more
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Simple sequence repeat variation in the
BMC Genomics, 2010 Background Simple sequence repeats (SSRs) are highly variable features of all genomes. Their rapid evolution makes them useful for tracing the evolutionary history of populations and investigating patterns of selection and mutation across gnomes.
Bergeron R Daniel +4 more
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Genetic Diversity Analysis of Soybean Collection Using Simple Sequence Repeat Markers [PDF]
Plants, 2023 Soybean [Glycine max (L.) Merr.] is a nutrient-rich crop that offers a sustainable source of dietary protein and edible oil. Determining the level of genetic diversity and relationships between various genetic resources involved in breeding programs is ...
Alibek Zatybekov +4 more
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Development of simple sequence repeat markers for sugarcane from data mining of expressed sequence tags [PDF]
Frontiers in Plant Science, 2023 Sugarcane (Saccharum spp. hybrids) is a worldwide acclaimed important agricultural crop used primarily for sugar production and biofuel. Sugarcane’s genetic complexity, aneuploidy, and extreme heterozygosity make it a challenging crop in developing ...
Huahao Jiang +8 more
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Development of simple sequence repeat markers and genetic diversity of Sipunculus nudus in the Beibu Gulf of China [PDF]
PeerJBackground The marine species Sipunculus nudus, valued for its medicinal and commercial significance, faces critical research gaps due to a lack of molecular markers (notably simple sequence repeats (SSRs)) and insufficient genetic diversity data ...
Chunli Han +6 more
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Valuation of genetic diversity of tomato (Solanum lycopersicum L.) based on the comparison of ISSR and SSR marker efficiency [PDF]
مجله بیوتکنولوژی کشاورزی, 2023 ObjectiveThis study was conducted to evaluate the genetic diversity of tomato accessions selected from the core collection of National Plant Gene Bank of Iran (NPGBI) based on a comparative assessment of SSR and ISSR markers. Genetic diversity of species
Fatemeh Hosseini +4 more
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Transcriptome sequencing of sesame (Sesamum indicum) using Illumina Platform
The Indian Journal of Agricultural Sciences, 2023 Sesame is an important oil seed crop worldwide and has essential health and medicinal values. In the present study, a high-throughput transcriptome sequencing of sesame was performed using Illumina paired-end sequencing technology for gene and marker ...
P SUPRIYA, A R RAO, K V BHAT
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The rate of spontaneous mutations in yeast deficient for MutSβ function
G3: Genes, Genomes, Genetics, 2022 Mutations in simple sequence repeat loci underlie many inherited disorders in humans, and are increasingly recognized as important determinants of natural phenotypic variation.
Yevgeniy Plavskin +3 more
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Genetic diversity and implications for conservation strategies of Drosera rotundifolia L. (Droseraceae) in northern Germany (Schleswig-Holstein) [PDF]
Mires and Peat, 2019 Drosera rotundifolia L. is a rare carnivorous herbaceous plant which occupies wet, acidic bogs and fens. Today species which are specialists on oligotrophic and acidic habitats like D.
S. Eschenbrenner +3 more
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Simple sequence repeats in prokaryotic genomes [PDF]
Proceedings of the National Academy of Sciences, 2007 Simple sequence repeats (SSRs) in DNA sequences are composed of tandem iterations of short oligonucleotides and may have functional and/or structural properties that distinguish them from general DNA sequences. They are variable in length because of slip-strand mutations and may also affect local structure of the DNA molecule or ...
Jan, Mrázek +2 more
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