Results 31 to 40 of about 3,195,499 (217)

Characterization and Development of EST-SSRs by Deep Transcriptome Sequencing in Chinese Cabbage (Brassica rapa L. ssp. pekinensis)

International Journal of Genomics, 2015
Simple sequence repeats (SSRs) are among the most important markers for population analysis and have been widely used in plant genetic mapping and molecular breeding.
Qian Ding, Jingjuan Li, Fengde Wang, Yihui Zhang, Huayin Li, Jiannong Zhang, Jianwei Gao   +6 more
doaj   +1 more source

Systemic Identification of Hevea brasiliensis EST-SSR Markers and Primer Screening

Journal of Nucleic Acids, 2017
This research aimed to systematically identify and preliminarily validate the Hevea brasiliensis expressed sequence tag (EST) information using Simple Sequence Repeat (SSR) and provide evidence for further development of SSR molecular marker.
Benjun Hou, Suping Feng, Yaoting Wu
doaj   +1 more source

Frequency, type, and distribution of EST-SSRs from three genotypes of Lolium perenne, and their conservation across orthologous sequences of Festuca arundinacea, Brachypodium distachyon, and Oryza sativa

BMC Plant Biology, 2007
Background Simple sequence repeat (SSR) markers are highly informative and widely used for genetic and breeding studies in several plant species. They are used for cultivar identification, variety protection, as anchor markers in genetic mapping, and in ...
Lübberstedt Thomas, Nielsen Klaus K, Didion Thomas, Frei Ursula K, Asp Torben   +4 more
doaj   +1 more source

Characterization and Transferable Utility of Microsatellite Markers in the Wild and Cultivated Arachis Species. [PDF]

PLoS ONE, 2016
Microsatellite or simple sequence repeat (SSR) is one of the most widely distributed molecular markers that have been widely utilized to assess genetic diversity and genetic mapping for important traits in plants.
Li Huang, Bei Wu, Jiaojiao Zhao, Haitao Li, Weigang Chen, Yanli Zheng, Xiaoping Ren, Yuning Chen, Xiaojing Zhou, Yong Lei, Boshou Liao, Huifang Jiang   +11 more
doaj   +1 more source

Exploiting EST databases for the development and characterization of EST-SSR markers in castor bean (Ricinus communis L.)

BMC Plant Biology, 2010
Background The castor bean (Ricinus communis L.), a monotypic species in the spurge family (Euphorbiaceae, 2n = 20), is an important non-edible oilseed crop widely cultivated in tropical, sub-tropical and temperate countries for its high economic value ...
Yang Jun-Bo, Tian Bo, Yang Chun, Qiu Lijun, Liu Aizhong   +4 more
doaj   +1 more source

Expressed Sequence Tag-Simple Sequence Repeat (EST-SSR) Marker Resources for Diversity Analysis of Mango (Mangifera indica L.)

Diversity, 2014
In this study, a collection of 24,840 expressed sequence tags (ESTs) generated from five mango (Mangifera indica L.) cDNA libraries was mined for EST-based simple sequence repeat (SSR) markers. Over 1,000 ESTs with SSR motifs were detected from more than
Natalie L. Dillon, David J. Innes, Ian S. E. Bally, Carole L. Wright, Luke C. Devitt, Ralf G. Dietzgen   +5 more
doaj   +1 more source

Development and characterization of EST‐SSR markers in Ostryopsis (Betulaceae) [PDF]

Applications in Plant Sciences, 2014
• Premise of the study: A set of expressed sequence tag (EST) microsatellite markers were developed and characterized using next‐generation sequencing technology for the Chinese genus Ostryopsis (Betulaceae).• Methods and Results: A total of 38 high‐quality simple sequence repeat (SSR) primers were identified, of which 15 could be successfully ...
Bing-Bing Liu, Bin Tian, Hui Ma, Zhi-Qiang Lu, Qiang Qiu, Kang-Shan Mao, Jian-Quan Liu   +6 more
openaire   +3 more sources

A second generation framework for the analysis of microsatellites in expressed sequence tags and the development of EST-SSR markers for a conifer, Cryptomeria japonica

BMC Genomics, 2012
Background Microsatellites or simple sequence repeats (SSRs) in expressed sequence tags (ESTs) are useful resources for genome analysis because of their abundance, functionality and polymorphism.
Ueno Saneyoshi, Moriguchi Yoshinari, Uchiyama Kentaro, Ujino-Ihara Tokuko, Futamura Norihiro, Sakurai Tetsuya, Shinohara Kenji, Tsumura Yoshihiko   +7 more
doaj   +1 more source

Development and evaluation of expressed sequence tag-derived microsatellite markers for hop genotyping

Biologia Plantarum, 2011
The use of expressed sequence tag-simple sequence repeat (EST-SSR) markers might reflect the better relationship among species or cultivars than markers previously used. The first set of 30 EST-SSR was developed in hop (Humulus lupulus L.).
J. Patzak, J. Matoušek
doaj   +1 more source

Develop a preliminary core germplasm with the novel polymorphism EST-SSRs derived from three transcriptomes of colored calla lily (Zantedeschia hybrida)

Frontiers in Plant Science, 2023
The development of high-throughput sequencing technology has made it possible to develop molecular markers such as EST-SSR from transcriptome sequences in non-model plants such as bulbous flowers. However, the EST-SSR markers that have been developed are
Yi Wang, Yi Wang, Tuo Yang, Xue Wang, Xue Wang, Xuan Sun, Xuan Sun, Hongyan Liu, Hongyan Liu, Di Wang, Di Wang, Huanxiao Wang, Huanxiao Wang, Guojun Zhang, Yanbing Li, Xian Wang, Zunzheng Wei   +16 more
doaj   +1 more source