Results 21 to 30 of about 4,151 (174)

Construction of a genetic map using EST-SSR markers and QTL analysis of major agronomic characters in hexaploid sweet potato (Ipomoea batatas (L.) Lam). [PDF]

PLoS ONE, 2017
The Sweet potato, Ipomoea batatas (L.) Lam, is difficult to study in genetics and genomics because it is a hexaploid. The sweet potato study not have been performed domestically or internationally. In this study was performed to construct genetic map and
Jin-Hee Kim, Il Kyung Chung, Kyung-Min Kim   +2 more
doaj   +1 more source

Assessment of EST-SSR markers for genetic analisys on coffee [PDF]

Bragantia, 2009
EST-SSR markers were used to investigate the genetic diversity among and within coffee populations, to explore the possibility of their use for fingerprinting of cultivars and to assist breeding programs. Seventeen markers, developed from ESTs (Expressed Sequence Tags) from the Brazilian Coffee Genome Project, were used. All markers showed polymorphism
Missio, Robson Fernando, Caixeta, Eveline Teixeira, Zambolim, Eunize Maciel, Pena, Guilherme Ferreira, Ribeiro, Ana Paula, Zambolim, Laércio, Pereira, Antônio Alves, Sakiyama, Ney Sussumu   +7 more
openaire   +3 more sources

Single-Molecule Long-Read Sequencing of Avocado Generates Microsatellite Markers for Analyzing the Genetic Diversity in Avocado Germplasm

Agronomy, 2019
Avocado (Persea americana Mill.) is an important fruit crop commercially grown in tropical and subtropical regions. Despite the importance of avocado, there is relatively little available genomic information regarding this fruit species.
Yu Ge, Xiaoping Zang, Lin Tan, Jiashui Wang, Yuanzheng Liu, Yanxia Li, Nan Wang, Di Chen, Rulin Zhan, Weihong Ma   +9 more
doaj   +1 more source

Characterization of new microsatellite markers from sugarcane (Saccharum officinarum) transcriptome

The Indian Journal of Agricultural Sciences, 2020
Microsatellites, or simple sequence repeats (SSR), developed by expressed sequence tag (EST) databases is an economical and efficient tools that can be used to perform genetic investigations at a functional level.
Yijing Gao, Hui Zhou, Junxian Liu, Jingchao Lei, Weixing Duan, Cuifang Yang, Shan Zhou, Xiang Li, Gemin Zhang, Baoqing Zhang, Hongwei Tan, Zeping Wang, Yangrui Li   +12 more
doaj   +1 more source

Expressed Sequence Tag-Simple Sequence Repeat (EST-SSR) Marker Resources for Diversity Analysis of Mango (Mangifera indica L.)

Diversity, 2014
In this study, a collection of 24,840 expressed sequence tags (ESTs) generated from five mango (Mangifera indica L.) cDNA libraries was mined for EST-based simple sequence repeat (SSR) markers. Over 1,000 ESTs with SSR motifs were detected from more than
Natalie L. Dillon, David J. Innes, Ian S. E. Bally, Carole L. Wright, Luke C. Devitt, Ralf G. Dietzgen   +5 more
doaj   +1 more source

Development and Validation of EST-SSR Markers from the Transcriptome of Adzuki Bean (Vigna angularis). [PDF]

PLoS ONE, 2015
The adzuki bean (Vigna angularis (Ohwi) Ohwi and Ohashi) is an important grain legume of Asia. It is cultivated mainly in China, Japan and Korea. Despite its importance, few genomic resources are available for molecular genetic research of adzuki bean ...
Honglin Chen, Liping Liu, Lixia Wang, Suhua Wang, Prakit Somta, Xuzhen Cheng   +5 more
doaj   +1 more source

Development and Characterization of Expressed Sequence-tagged Simple Sequence Repeat Markers for Denphal-type Dendrobium Cultivars and Transferability to Dendrobium Species

Journal of the American Society for Horticultural Science, 2022
Denphal-type Dendrobium is the most popular orchid for cut flower and potted plant trade. To improve commercial traits, many novel cultivars have been produced through hybridization by commercial breeders.
Shuangshuang Yi , Mingzhong Huang, Guangsui Yang , Junhai Niu , Shunjiao Lu, Junmei Yin , Zhiqun Zhang   +6 more
doaj   +1 more source

A second generation framework for the analysis of microsatellites in expressed sequence tags and the development of EST-SSR markers for a conifer, Cryptomeria japonica

BMC Genomics, 2012
Background Microsatellites or simple sequence repeats (SSRs) in expressed sequence tags (ESTs) are useful resources for genome analysis because of their abundance, functionality and polymorphism.
Ueno Saneyoshi, Moriguchi Yoshinari, Uchiyama Kentaro, Ujino-Ihara Tokuko, Futamura Norihiro, Sakurai Tetsuya, Shinohara Kenji, Tsumura Yoshihiko   +7 more
doaj   +1 more source

Development of genic and genomic SSR markers of robusta coffee (Coffea canephora Pierre Ex A. Froehner). [PDF]

PLoS ONE, 2014
Coffee breeding and improvement efforts can be greatly facilitated by availability of a large repository of simple sequence repeats (SSRs) based microsatellite markers, which provides efficiency and high-resolution in genetic analyses.
Prasad S Hendre, Ramesh K Aggarwal
doaj   +1 more source

A White Campion (Silene latifolia) floral expressed sequence tag (EST) library: annotation, EST-SSR characterization, transferability, and utility for comparative mapping

BMC Genomics, 2009
Background Expressed sequence tag (EST) databases represent a valuable resource for the identification of genes in organisms with uncharacterized genomes and for development of molecular markers. One class of markers derived from EST sequences are simple
Marais Gabriel AB, Oger-Desfeux Christine, Moccia Maria, Widmer Alex   +3 more
doaj   +1 more source