Results 91 to 100 of about 48,161 (219)
MetaPalette: A $k$-mer painting approach for metagenomic taxonomic profiling and quantification of novel strain variation [PDF]
arXiv, 2016 Metagenomic profiling is challenging in part because of the highly uneven sampling of the tree of life by genome sequencing projects and the limitations imposed by performing phylogenetic inference at fixed taxonomic ranks. We present the algorithm MetaPalette which uses long $k$-mer sizes ($k=30, 50$) to fit a $k$-mer "palette" of a given sample to ...
arxiv
Литосфера, 2019 Автор разрабатывает концепцию о роли фундаментальных физических механизмов в биологической эволюции с выделением этапов фазовых переходов в эволюции биосферы, способствующих реализации новых адаптивных форм.
doaj
Tracing the origin of functional and conserved domains in the human proteome: implications for protein evolution at the modular level [PDF]
, 2006 BACKGROUND: The functional repertoire of the human proteome is an incremental collection of functions accomplished by protein domains evolved along the Homo sapiens lineage.
Guda, Chittibabu, Pal, Lipika R
core +3 more sources
Flowering Plant Microbiomes and Network Interactions Across an Urban Gradient
Environmental Microbiology, Volume 27, Issue 4, April 2025.Analysis of plant anthosphere microbiomes reveals that the bacterial and fungal microbiomes are diverse in the plant community with no effect of urbanisation. Highly prevalent and abundant bacteria and fungi tend to significantly co‐occur. Detections of rbcL in flower‐plant networks identify Paulownia sp.
Katherine D. Chau +3 more
wiley +1 more source
The pattern and process of gene family evolution [PDF]
arXiv, 2011 Large scale databases are available that contain homologous gene families constructed from hundreds of complete genome sequences from across the three domains of Life. Here we discuss approches of increasing complexity aimed at extracting information on the pattern and process of gene family evolution from such datasets.
arxiv
Environmental Microbiology Reports, Volume 17, Issue 2, April 2025.We conducted a year‐long monthly epimicrobiota sampling on five algal species inhabiting an English Channel rocky shore, combining qPCR measurements of 16S rRNA gene copies with amplicon metabarcoding. Algal host emerged as the primary driver of epibacterial community composition, before seasonality.
Maéva Brunet +3 more
wiley +1 more source
Haematobia irritans clone Hi-18S-ab-fr 18S ribosomal RNA gene, partial sequence [PDF]
, 2007 GenBank: EU013947.1 Haematobia irritans clone Hi-18S-ab-fr 18S ribosomal RNA gene, partial sequenceFil: Sonvico, A.. Universidad de Buenos Aires. Facultad de Agronomía; ArgentinaFil: Filiberti, Adrian.
Filiberti, Adrian +2 more
core
Genome-wide metabolic (re-) annotation of Kluyveromyces lactis [PDF]
, 2012 Even before having its genome sequence published in 2004, Kluyveromyces lactis had long been considered a model organism for studies in genetics and physiology.
Dias, Oscar +3 more
core +1 more source
Environmental Microbiology Reports, Volume 17, Issue 2, April 2025.Biofilm and planktonic bacterial communities in Lake Erie's western basin show distinct compositions, with only ~10% shared ASVs. While plankton communities remain consistent across depths, biofilms exhibit depth‐ and time‐dependent variability, with early‐summer communities differing before converging in late summer.
Rylie L. Robinson +2 more
wiley +1 more source
A global characterization and identification of multifunctional enzymes. [PDF]
PLoS ONE, 2012 Multi-functional enzymes are enzymes that perform multiple physiological functions. Characterization and identification of multi-functional enzymes are critical for communication and cooperation between different functions and pathways within a complex ...
Xian-Ying Cheng +9 more
doaj +1 more source