Results 111 to 120 of about 48,161 (219)

18S rRNA Metagenomic Analysis of Nodular Gill Disease in Swiss Rainbow Trout (Oncorhynchus mykiss)

Journal of Fish Diseases, Volume 48, Issue 3, March 2025.
ABSTRACT Nodular gill disease (NGD) is a serious proliferative gill condition that affects farmed salmonids, particularly in Europe. While the cause of NGD remains unknown (and maybe multifactorial), various amoebae are often isolated from the gills of affected fish and can in some cases be seen associated with lesions by histopathology.
James W. Wynne, Chloe J. English, Stefania M. Vannetti, Megan Rigby, Petra R. Quezada‐Rodriguez, Ralph Knüsel, Christine Huynh, Heike Schmidt‐Posthaus   +7 more
wiley   +1 more source

Principles of bacterial genome organization, a conformational point of view

Molecular Microbiology, Volume 123, Issue 3, Page 195-205, March 2025.
Chromosome conformation capture coupled with deep sequencing (Hi‐C) has revealed the diversity of genome architectures across bacterial species, characterizing new chromosome structural layers and the activities of factors involved in their organization.
Sokrich Ponndara, Mounia Kortebi, Frédéric Boccard, Stéphanie Bury‐Moné, Virginia S. Lioy   +4 more
wiley   +1 more source

Stool microbiome dataset of the critically endangered Puerto Rican parrot (Amazona vittata)

Data in Brief, 2021
The Puerto Rican parrot (Amazona vittata), endemic to Puerto Rico, is the only native parrot in the United States and is classified as a critically endangered species. There are two captive populations of A.
Miguel G. Rodriguez-Reyes, Carlos Rios-Velazquez   +1 more
doaj  

Size Matters: Assessing Optimum Soil Sample Size for Fungal and Bacterial Community Structure Analyses Using High Throughput Sequencing of rRNA Gene Amplicons

Frontiers in Microbiology, 2016
We examined the effect of different soil sample sizes obtained from an agricultural field, under a single cropping system uniform in soil properties and aboveground crop responses, on bacterial and fungal community structure and microbial diversity ...
Christopher Ryan Penton, V.S.R Gupta Vadakattu, Julian eYu, James M. Tiedje   +3 more
doaj   +1 more source

Genome guided, organ-specific transcriptome assembly of the European flounder (P. flesus) from the Baltic Sea

Scientific Data
Although the European flounder is frequently used in research and has economic importance, there is still lack of comprehensive transcriptome data for this species. In the present research we show RNA-Seq data from ten selected organs of P. flesus female
Konrad Pomianowski, Ewa Kulczykowska, Artur Burzyński   +2 more
doaj   +1 more source

Genetic Analysis of Bacterial Gene Variations in Sulfidic Springs and the Influence on Geochemistry [PDF]

, 2013
Culture-independent methods have revolutionized environmental microbiology and geomicrobiology studies and next-generation sequencing and metagenomics techniques continue to reveal the vast genetic diversity of microorganisms.
Headd, Brendan Joseph
core   +1 more source

The largest reservoir of mitochondrial introns is a relic of an ancestral split gene [PDF]

, 2010
In eukaryotes, introns are located in nuclear and organelle genes from several kingdoms (ref. 1-4). Large introns (0.1 to 5 kbp) are frequent in mitochondrial genomes of plant and fungi (ref.
Cyril Ferandon, Gerard Barroso, Jean-Pierre Benedetto, Michel Castroviejo, Philippe Callac, Serge Moukha   +5 more
core   +1 more source

RBX Pan Eukaryota sequences.fasta

, 2020
Ricardo Canavate Del Pino
openalex   +4 more sources

Integrated Metagenomic and Metatranscriptomic Analyses of Microbial Communities in the Meso- and Bathypelagic Realm of North Pacific Ocean

Marine Drugs, 2013
Although emerging evidence indicates that deep-sea water contains an untapped reservoir of high metabolic and genetic diversity, this realm has not been studied well compared with surface sea water.
Deirdre R. Meldrum, Weimin Gao, Weiwen Zhang, Roger H. Johnson, Jieying Wu   +4 more
doaj   +1 more source

Regions with two amino acids in protein sequences: A step forward from homorepeats into the low complexity landscape

Computational and Structural Biotechnology Journal, 2022
Low complexity regions (LCRs) differ in amino acid composition from the background provided by the corresponding proteomes. The simplest LCRs are homorepeats (or polyX), regions composed of mostly-one amino acid type.
Pablo Mier, Miguel A. Andrade-Navarro
doaj