Results 31 to 40 of about 33,209,906 (421)

Identifying differentially expressed transcripts from RNA-seq data with biological variation [PDF]

Bioinformatics 28(13):1721-1728, 2012, 2011
Motivation: High-throughput sequencing enables expression analysis at the level of individual transcripts. The analysis of transcriptome expression levels and differential expression estimation requires a probabilistic approach to properly account for ambiguity caused by shared exons and finite read sampling as well as the intrinsic biological variance
arxiv   +1 more source

Differential expression analysis with global network adjustment [PDF]

, 2013
<p>Background: Large-scale chromosomal deletions or other non-specific perturbations of the transcriptome can alter the expression of hundreds or thousands of genes, and it is of biological interest to understand which genes are most profoundly ...
A Antonellis, A Zellner, AE Hoerl, AI Su, D Bates, DB Dahl, E Choy, EJ Cosgrove, H Zou, J Friedman, J Ruan, J Schoumans, J Wettenhall, Jannine D Cody, Jonathan A Gelfond, Joseph G Ibrahim, JT Leek, M Gustafsson, M Newton, Mayetri Gupta, Ming-Hui Chen, R Development Core Team, R Tibshirani, RJ Prill, S Pounds, SC Smith, SM Siepka, T Barrett, T Barrett   +28 more
core   +3 more sources

Cloning, molecular properties and differential expression analysis of the isopentenyl diphosphate isomerase gene in Sanghuangporus baumii

Biotechnology & Biotechnological Equipment, 2020
Sanghuangporus baumii (Pilát) L.W. Zhou & Y.C. Dai, a popular medicinal fungus, has been used to treat several diseases by its triterpenoids bioactive ingredient for many years. However, the triterpenoids content of S.
Zengcai Liu, Tingting Sun, Shixin Wang, Li Zou   +3 more
doaj   +1 more source

Genome-Wide Identification and Characterization of GASA Gene Family in Nicotiana tabacum

Frontiers in Genetics, 2022
The gibberellic acid stimulated Arabidopsis (GASA) gene family is critical for plant growth, development, and stress response. GASA gene family has been studied in various plant species, however, the GASA gene family in tobacco (Nicotiana tabacum) have ...
Zhaowu Li, Zhaowu Li, Zhaowu Li, Junping Gao, Genhong Wang, Shuaibin Wang, Kai Chen, Wenxuan Pu, Yaofu Wang, Qingyou Xia, Xiaorong Fan, Xiaorong Fan   +11 more
doaj   +1 more source

Global gene expression analysis of human erythroid progenitors [PDF]

, 2011
This article is available open access through the publisher’s website. Copyright @ 2011 American Society of Hematology. This article has an erratum: http://bloodjournal.hematologylibrary.org/content/118/26/6993.3.Understanding the pattern of gene ...
Addya, Alison T. Merryweather-Clarke, Allison, Ann Atzberger, Arbouzova, Asoke K. Nandi, Bellido, Bond, Brown, Brown, Brown, Bruno, Craig Waugh, David J. Roberts, Deveraux, Dolznig, Douglas R. Higgs, Dowling, Drissen, Edgar, Eguchi-Ishimae, Eldar, Ganesh, Gotea, Gubin, Huang, Irizarry, Jesnowski, Kadri, Karanam, Kathryn J. H. Robson, Keller, Kevin Clark, Kubo, Laiosa, Lancrin, Li, Li, Macaulay, Miller, Muller, Muta, Nicki Gray, Orkin, Peller, Pope, Raisanen, Ridley, Saeki, Shamit Soneji, Sharrocks, Simon J. McGowan, Singleton, Smyth, Soranzo, Sripichai, Stephen Taylor, Sturn, Sudo, Terszowski, Tsai, Tseng, Veronica J. Buckle, Watkins, Welch, William G. Wood, Yamamoto, Yu, Zambelli, Zhu, Zhu   +70 more
core   +1 more source

DEqMS: A Method for Accurate Variance Estimation in Differential Protein Expression Analysis*

Molecular & Cellular Proteomics, 2020
Differential analysis of MS-data to identify biomarkers or to understand biology is a cornerstone in proteomics. DEqMS is a robust method for analysis of both labelled and label-free MS-data.
Yafeng Zhu, L. Orre, Yan Zhou Tran, G. Mermelekas, H. Johansson, A. Malyutina, S. Anders, J. Lehtiö   +7 more
semanticscholar   +1 more source

A computational study of the Warburg effect identifies metabolic targets inhibiting cancer migration

Molecular Systems Biology, 2014
Over the last decade, the field of cancer metabolism has mainly focused on studying the role of tumorigenic metabolic rewiring in supporting cancer proliferation.
Keren Yizhak, Sylvia E Le Dévédec, Vasiliki Maria Rogkoti, Franziska Baenke, Vincent C de Boer, Christian Frezza, Almut Schulze, Bob van de Water, Eytan Ruppin   +8 more
doaj   +1 more source

Molecular and Phylogenetic Analyses of the Mediator Subunit Genes in Solanum lycopersicum

Frontiers in Genetics, 2019
The Mediator complex is a multi-subunit protein assembly that serves as a central scaffold to help regulate DNA-binding transcription factors (TFs) and RNA polymerase II (Pol II) activity controlled gene expression programmed in response to developmental
Yunshu Wang, Honglian Liang, Guoping Chen, Changguang Liao, Yicong Wang, Zongli Hu, Qiaoli Xie   +6 more
doaj   +1 more source

Gene expression in large pedigrees: analytic approaches. [PDF]

, 2016
BackgroundWe currently have the ability to quantify transcript abundance of messenger RNA (mRNA), genome-wide, using microarray technologies. Analyzing genotype, phenotype and expression data from 20 pedigrees, the members of our Genetic Analysis ...
Cantor, Rita M, Cordell, Heather J
core   +1 more source

Genome-Wide Identification of MATE Gene Family in Potato (Solanum tuberosum L.) and Expression Analysis in Heavy Metal Stress

Frontiers in Genetics, 2021
A genome-wide identification and expression analysis of multidrug and toxic compound extrusion (MATE) gene family in potato was carried out to explore the response of MATE proteins to heavy meta stress.
Yun Huang, Guandi He, Guandi He, Guandi He, Weijun Tian, Dandan Li, Lulu Meng, Danxia Wu, Tengbing He, Tengbing He   +9 more
doaj   +1 more source