Results 91 to 100 of about 57,211 (263)

Automated FRAP microscopy for high‐throughput analysis of protein dynamics in chromatin organization and transcription

FEBS Open Bio, EarlyView.
RoboMic is an automated confocal microscopy pipeline for high‐throughput functional imaging in living cells. Demonstrated with fluorescence recovery after photobleaching (FRAP), it integrates AI‐driven nuclear segmentation, ROI selection, bleaching, and analysis.
Selçuk Yavuz, Bart Geverts, Johan A. Slotman, Andrea Sacchetti, Stefan Prekovic, Martin E. van Royen, Adriaan B. Houtsmuller   +6 more
wiley   +1 more source

Data Dependence for Ishikawa Iteration When Dealing with Contractive-Like Operators

Fixed Point Theory and Applications, 2008
We prove a convergence result and a data dependence for Ishikawa iteration when applied to contraction-like operators. An example is given, in which instead of computing the fixed point of an operator, we approximate the operator with a contractive-like ...
Teodor Grosan, Ş. M. Şoltuz
doaj   +1 more source

Mycobacterial cell division arrest and smooth‐to‐rough envelope transition using CRISPRi‐mediated genetic repression systems

FEBS Open Bio, EarlyView.
CRISPRI‐mediated gene silencing and phenotypic exploration in nontuberculous mycobacteria. In this Research Protocol, we describe approaches to control, monitor, and quantitatively assess CRISPRI‐mediated gene silencing in M. smegmatis and M. abscessus model organisms.
Vanessa Point, Wafaa Achache, Janïs Laudouze, Eliana Sepulveda Ramos, Mickaël Maziero, Céline Crauste, Stéphane Canaan, Pierre Santucci   +7 more
wiley   +1 more source

A Modified Mann Iteration by Boundary Point Method for Finding Minimum-Norm Fixed Point of Nonexpansive Mappings

Abstract and Applied Analysis, 2013
Let H be a real Hilbert space and C⊂H a closed convex subset. Let T:C→C be a nonexpansive mapping with the nonempty set of fixed points Fix(T). Kim and Xu (2005) introduced a modified Mann iteration x0=x∈C, yn=αnxn+(1−αn)Txn, xn+1=βnu+(1−βn)yn, where u∈C
Songnian He, Wenlong Zhu
doaj   +1 more source

C2α‐carbanion‐protonating glutamate discloses tradeoffs between substrate accommodation and reaction rate in actinobacterial 2‐hydroxyacyl‐CoA lyase

FEBS Open Bio, EarlyView.
Enzymes of the 2‐hydroxyacyl‐CoA lyase group catalyze the condensation of formyl‐CoA with aldehydes or ketones. Thus, by structural adaptation of active sites, practically any pharmaceutically and industrially important 2‐hydroxyacid could be biotechnologically synthesized. Combining crystal structure analysis, active site mutations and kinetic assays,
Michael Zahn, Barbara Seroka, Ryszard Lazny, Zenon Lotowski, Thore Rohwerder   +4 more
wiley   +1 more source

THE FIXED POINT ITERATIONS METHOD FOR THE CONTRACTION MAPPING

MM Science Journal
This paper studies the fixed point iterations method that considers the contraction mapping and one of its applications for the parameter re-estimation of the normal (Gaussian) distribution, where the presence of outliers is considered. In order to study the observed method Banach’s fixed point theorem is presented, where it is shown that the ...
V. Novoselac, A. Katic, Z. Matijasevic, M. Culetic Condric   +3 more
openaire   +1 more source

A light‐triggered Time‐Resolved X‐ray Solution Scattering (TR‐XSS) workflow with application to protein conformational dynamics

FEBS Open Bio, EarlyView.
Time‐resolved X‐ray solution scattering captures how proteins change shape in real time under near‐native conditions. This article presents a practical workflow for light‐triggered TR‐XSS experiments, from data collection to structural refinement. Using a calcium‐transporting membrane protein as an example, the approach can be broadly applied to study ...
Fatemeh Sabzian‐Molaei, Fredrik Orädd, Konstantinos Magkakis, Magnus Andersson   +3 more
wiley   +1 more source

Single‐molecule DNA flow‐stretch assays for high‐throughput DNA–protein interaction studies

FEBS Open Bio, EarlyView.
We describe an optimised single‐molecule DNA flow‐stretch assay that visualises DNA–protein interactions in real time. Linear DNA fragments are tethered to a surface and stretched by buffer flow for fluorescence imaging. Using λ and φX174 DNA, this protocol enhances reproducibility and accessibility, providing a versatile approach for studying diverse ...
Ayush Kumar Ganguli, Mohammad Nour Alsamsam, Ugnė Bagdonaitė, Van Truc Vu, Chun‐Jen Huang, Polina Kuzhir, Mindaugas Zaremba, Aurimas Kopūstas, Marijonas Tutkus   +8 more
wiley   +1 more source

Chameleon sequences reveal structural effects in proteins representing micelle‐like distribution of hydrophobicity

FEBS Open Bio, EarlyView.
Amino acids sequence of two different proteins with the same sequence (chameleon sequence—black boxes) represent in 3D structure of the proteins different secondary structures: HHHH—helical and BBB—Beta‐structural. The chains folded in water environment adopt different III‐order structures in which the chameleon fragments appear to adopt similar status
Irena Roterman, Katarzyna Stapor, Leszek Konieczny, Krzysztof Gądek, Piotr Nowakowski   +4 more
wiley   +1 more source

Fixed Point Results in Convex Double-Controlled Metric-Type Spaces and Applications

Mathematics
This paper investigates fixed point results in convex double-controlled metric-type spaces. By introducing a convex structure on double-controlled metric-type spaces, we study the convergence of the Mann iteration process for contractive mappings in this
Nazli Kadioglu Karaca
doaj   +1 more source