Establishment of the endocrine variant extractor and its clinical application in identifying a novel <i>GATA3</i> mutation in HDR syndrome. [PDF]
Han Y +6 more
europepmc +1 more source
A Guide to Enzymatic Targeted Methylation Sequencing Bioinformatics Workflow: Best Practices
Abstract We present a best‐practices protocol for targeted DNA methylation sequencing analysis that integrates both bisulfite‐ and enzymatic‐conversion approaches using Twist Bioscience technology. Building on established tools and vendor‐recommended workflows, this protocol provides a standardized, fully reproducible framework that addresses current ...
Vitória Rodrigues Guimarães Alves +12 more
wiley +1 more source
Automated reanalysis of genomic data for rare disease diagnostics at scale. [PDF]
Welland MJ +36 more
europepmc +1 more source
20 HCC‐derived organoids, three adjacent non‐tumour tissue‐derived organoids, and 12 HCC‐derived cell lines from 20 patients were established and biobanked. Integrative analyses combining drug screening, whole‐exome sequencing, and RNA sequencing revealed molecular subtypes and identified candidate determinants of lenvatinib response.
Seo‐Hyeon Kim +9 more
wiley +1 more source
ChoCallate: a computational pipeline for consensus germline variant calling in genomic sequencing data. [PDF]
Ermolaev A, Divashuk M.
europepmc +1 more source
Rhabdophis nuchalis populations from four regions were analyzed using genome resequencing. The results showed that the Sichuan and Yunnan populations formed one cluster, while the Hubei and Shaanxi populations formed another. The Yunnan population displayed the highest genetic diversity.
Fei Wu +9 more
wiley +1 more source
A Global Assessment of the Transcription-Dependent Single Nucleotide Variants Relies on the Characteristics of RNA-Sequencing Technologies. [PDF]
Zhang X +7 more
europepmc +1 more source
Responses of Antarctic seabird populations to past climate change
Higher‐order predators such as Antarctic seabirds serve as ecological indicators of environmental change and provide a crucial trophic link between marine and terrestrial ecosystems. Despite their prevalence and significance in the Antarctic ecosystem, there is a lack of understanding of the impacts of major regime shifts in paleoclimate on flighted ...
Elize Y. X. Ng +6 more
wiley +1 more source
HBV biomarkers outperform host genetic variants in distinguishing occult HBV infection from chronic carriers. [PDF]
Zhou L +6 more
europepmc +1 more source
Abstract UKALL14 (NCT01085617) T‐cell arm was a phase 3, randomized‐controlled trial. Adults aged 25–65 years were randomized 1:1 at entry to receive standard of care (SOC) or SOC + nelarabine 1.5 g/m2 (Days 1, 3, and 5) to be administered following second induction. The primary end‐point was event‐free survival (EFS).
Clare J. Rowntree +14 more
wiley +1 more source

