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Highlights of the 'Gene Nomenclature Across Species' Meeting [PDF]

Human Genomics, 2010
The first 'Gene Nomenclature Across Species' meeting was held on 12th and 13th October 2009, at the Møller Centre in Cambridge, UK. This meeting, organised and hosted by the HUGO Gene Nomenclature Committee (HGNC), brought together invited experts from ...
Bruford Elspeth A
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The past, present and future of immune repertoire biology – the rise of next-generation repertoire analysis

Frontiers in Immunology, 2013
T and B cell repertoires are collections of lymphocytes, each characterised by its antigen-specific receptor. We review here classical technologies and analysis strategies developed to assess Immunoglobulin (IG) and T cell receptor (TR) repertoire ...
Adrien eSix, Adrien eSix, Adrien eSix, Adrien eSix, Adrien eSix, Encarnita eMariotti-Ferrandiz, Encarnita eMariotti-Ferrandiz, Encarnita eMariotti-Ferrandiz, Encarnita eMariotti-Ferrandiz, Wahiba eChaara, Wahiba eChaara, Wahiba eChaara, Wahiba eChaara, Wahiba eChaara, Susana eMagadan, Hang-Phuong ePham, Hang-Phuong ePham, Marie-Paule eLefranc, Thierry eMora, Véronique eThomas-Vaslin, Véronique eThomas-Vaslin, Véronique eThomas-Vaslin, Véronique eThomas-Vaslin, Aleksandra M. Walczak, Pierre eBoudinot   +24 more
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Gene nomenclature by default, or BLASTing to Babel

Human Genomics, 2005
The current proliferation of mammalian genomes is creating a nomenclature issue caused by naming genes based on their best BLAST hit to a gene in another annotated genome.
Nelson David R
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Reply to Schramm, L. Comment on “Li et al. BDP1 Variants I1264M and V1347M Significantly Associated with Clinical Outcomes of Pediatric Neuroblastoma Patients Imply a New Prognostic Biomarker: A 121-Patient Cancer Genome Study. Diagnostics 2021, 11, 2364”

Diagnostics, 2022
We thank Professor Laura Schramm for her comment on the history and clarification of BDP1 nomenclature, her contribution to gene cloning [...]
Xiaoqing Li, Lan Sun, Andres Stucky, Lingli Tu, Jin Cai, Xuelian Chen, Zhongjun Wu, Xuhong Jiang, Shengwen Calvin Li   +8 more
doaj   +1 more source

Phylogeny of teleost connexins reveals highly inconsistent intra- and interspecies use of nomenclature and misassemblies in recent teleost chromosome assemblies

BMC Genomics, 2020
Background Based on an initial collecting of database sequences from the gap junction protein gene family (also called connexin genes) in a few teleosts, the naming of these sequences appeared variable. The reasons could be (i) that the structure in this
Svein-Ole Mikalsen, Marni Tausen, Sunnvør í Kongsstovu   +2 more
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Adoption of PERILIPIN as a unifying nomenclature for the mammalian PAT-family of intracellular lipid storage droplet proteins

Journal of Lipid Research, 2010
The PAT family of proteins has been identified in eukaryotic species as diverse as vertebrates, insects, and amebazoa. These proteins share a highly conserved sequence organization and avidity for the surfaces of intracellular, neutral lipid storage ...
Alan R. Kimmel, Dawn L. Brasaemle, Monica McAndrews-Hill, Carole Sztalryd, Constantine Londos   +4 more
doaj   +1 more source

Proposal of a new nomenclature for introns in protein-coding genes in fungal mitogenomes

IMA Fungus, 2019
Fungal mitochondrial genes are often invaded by group I or II introns, which represent an ideal marker for understanding fungal evolution. A standard nomenclature of mitochondrial introns is needed to avoid confusion when comparing different fungal ...
Shu Zhang, Yong-Jie Zhang
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RGST - Rat Gene Symbol Tracker, a database for defining official rat gene symbols

BMC Genomics, 2008
Background The names of genes are central in describing their function and relationship. However, gene symbols are often a subject of controversy. In addition, the discovery of mammalian genes is now so rapid that a proper use of gene symbol nomenclature
Ståhl Fredrik, Petersen Greta
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Use of gene sequences as type for naming prokaryotes: Recommendations of the international committee on the taxonomy of chlamydiae

New Microbes and New Infections, 2023
The International Committee on Systematics of Prokaryotes (ICSP) discussed and rejected in 2020 a proposal to modify the International Code of Nomenclature of Prokaryotes to allow the use of gene sequences as type for naming prokaryotes.
Gilbert Greub, Trestan Pillonel, Patrik M. Bavoil, Nicole Borel, Lee Ann Campbell, Deborah Dean, Scott Hefty, Matthias Horn, Servaas A. Morré, Scot P. Ouellette, Yvonne Pannekoek, Mirja Puolakkainen, Peter Timms, Raphael Valdivia, Daisy Vanrompay   +14 more
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Finding one's way in proteomics: a protein species nomenclature

Chemistry Central Journal, 2009
Our knowledge of proteins has greatly improved in recent years, driven by new technologies in the fields of molecular biology and proteome research. It has become clear that from a single gene not only one single gene product but many different ones ...
Holzhütter Hermann-Georg, Apweiler Rolf, Schlüter Hartmut, Jungblut Peter R   +3 more
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