Results 1 to 10 of about 4,323,664 (255)

GenomeFingerprinter and universal genome fingerprint analysis for systematic comparative genomics [PDF]

, 2013
How to compare whole genome sequences at large scale has not been achieved via conventional methods based on pair-wisely base-to-base comparison; nevertheless, no attention was paid to handle in-one-sitting a number of genomes crossing genetic category (chromosome, plasmid, and phage) with farther divergences (much less or no homologous) over large ...
Ai, Hannan, Ai, Yuncan, Meng, Fanmei, Zhao, Lei   +3 more
arxiv   +6 more sources

Development and performance evaluation of an artificial intelligence algorithm using cell-free DNA fragment distance for non-invasive prenatal testing (aiD-NIPT)

Frontiers in Genetics, 2022
With advances in next-generation sequencing technology, non-invasive prenatal testing (NIPT) has been widely implemented to detect fetal aneuploidies, including trisomy 21, 18, and 13 (T21, T18, and T13).
Junnam Lee, Junnam Lee, Sae-Mi Lee, Jin Mo Ahn, Tae-Rim Lee, Wan Kim, Eun-Hae Cho, Chang-Seok Ki   +7 more
doaj   +1 more source

The Gene Ontology's Reference Genome Project: a unified framework for functional annotation across species. [PDF]

PLoS Computational Biology, 2009
The Gene Ontology (GO) is a collaborative effort that provides structured vocabularies for annotating the molecular function, biological role, and cellular location of gene products in a highly systematic way and in a species-neutral manner with the aim ...
Reference Genome Group of the Gene Ontology Consortium
doaj   +1 more source

Visual Genome: Connecting Language and Vision Using Crowdsourced Dense Image Annotations [PDF]

International Journal of Computer Vision, 2016
Despite progress in perceptual tasks such as image classification, computers still perform poorly on cognitive tasks such as image description and question answering.
Ranjay Krishna, Yuke Zhu, O. Groth, Justin Johnson, K. Hata, Joshua Kravitz, Stephanie Chen, Yannis Kalantidis, Li-Jia Li, David A. Shamma, Michael S. Bernstein, Li Fei-Fei   +11 more
semanticscholar   +1 more source

Pursuing Advances in DNA Sequencing Technology to Solve a Complex Genomic Jigsaw Puzzle: The Agglutinin-Like Sequence (ALS) Genes of Candida tropicalis

Frontiers in Microbiology, 2021
The agglutinin-like sequence (ALS) gene family encodes cell-surface adhesins that interact with host and abiotic surfaces, promoting colonization by opportunistic fungal pathogens such as Candida tropicalis.
Soon-Hwan Oh, Allyson Isenhower, Rubi Rodriguez-Bobadilla, Brooke Smith, Jillian Jones, Vit Hubka, Vit Hubka, Christopher Fields, Alvaro Hernandez, Lois L. Hoyer   +9 more
doaj   +1 more source

Multi-angle meta-analysis of the gut microbiome in Autism Spectrum Disorder: a step toward understanding patient subgroups

Scientific Reports, 2022
Observational studies have shown that the composition of the human gut microbiome in children diagnosed with Autism Spectrum Disorder (ASD) differs significantly from that of their neurotypical (NT) counterparts.
Kiana A. West, Xiaochen Yin, Erica M. Rutherford, Brendan Wee, Jinlyung Choi, Brianna S. Chrisman, Kaiti L. Dunlap, Roberta L. Hannibal, Wiputra Hartono, Michelle Lin, Edward Raack, Kayleen Sabino, Yonggan Wu, Dennis P. Wall, Maude M. David, Karim Dabbagh, Todd Z. DeSantis, Shoko Iwai   +17 more
doaj   +1 more source

First Characterization of a Hafnia Phage Reveals Extraordinarily Large Burst Size and Unusual Plaque Polymorphism

Frontiers in Microbiology, 2022
A unique lytic phage infecting Hafnia paralvei was isolated and identified. Hafnia phage Ca belongs to the family Autographiviridae, possessing an icosahedral head with a diameter of 55 nm and a short non-contractile tail.
Lingting Pan, Lingting Pan, Dengfeng Li, Zhitong Sun, Wei Lin, Wei Lin, Binxin Hong, Weinan Qin, Lihua Xu, Wencai Liu, Qin Zhou, Fei Wang, Ruqian Cai, Minhua Qian, Yigang Tong   +14 more
doaj   +1 more source

DNA sequencing in the classroom: complete genome sequence of two earwig (Dermaptera; Insecta) species

Biological Research, 2023
Background Despite representing the largest fraction of animal life, the number of insect species whose genome has been sequenced is barely in the hundreds.
Sanae Kobayashi, Jonathan E. Maldonado, Alexis Gaete, Ingrid Araya, Constanza Aguado-Norese, Nicolás Cumplido, Sebastián Díaz, Alonso Espinoza, Edelmira Fernández, Felipe Gajardo, Felipe González-Ordenes, Khantati Hauyon, Piedad Maldonado, Rodrigo Maldonado, Isabel Pochet, Aníbal Riveros, Paula Sandoval, Ailynne Sepúlveda-González, Camila Stuardo, Patricio Tapia-Reyes, Carolina Thornton, Soledad Undurraga, Macarena Varas, Camilo Valdivieso, School Earwig Genome Consortium, Rodrigo A. Gutiérrez, Ariel Orellana, Martín Montecino, Alejandro Maass, Mauricio González, Miguel L. Allende, Christian Hodar, Paula Irles   +32 more
doaj   +1 more source

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

bioRxiv, 2016
The Illumina DNA sequencing platform generates accurate but short reads, which can be used to produce accurate but fragmented genome assemblies. Pacific Biosciences and Oxford Nanopore Technologies DNA sequencing platforms generate long reads that can ...
R. Wick, L. Judd, C. Gorrie, K. Holt
semanticscholar   +1 more source

Genome maps across 26 human populations reveal population-specific patterns of structural variation. [PDF]

, 2019
Large structural variants (SVs) in the human genome are difficult to detect and study by conventional sequencing technologies. With long-range genome analysis platforms, such as optical mapping, one can identify large SVs (>2 kb) across the genome in ...
Cao, Han, Chan, Ting-Fung, Chow, Eugene YC, Chu, Catherine, Chung, Claire YL, Hastie, Alex R, Jin, Nana, Kwok, Pui-Yan, Lam, Ernest T, Leung, Alden KY, Levy-Sakin, Michal, Li, Le, Lin, Chin, Ma, Walfred, McCaffrey, Jennifer, Mostovoy, Yulia, Naguib, Ahmed, Pastor, Steven, Poon, Annie, Rajagopalan, Ramakrishnan, Sibert, Justin, Wang, Wei-Ping, Wong, Karen HY, Xiao, Ming, Yip, Kevin Y, Young, Eleanor   +25 more
core   +2 more sources