Results 31 to 40 of about 717,916 (306)
Finished Genome Sequence of Collimonas arenae Cal35. [PDF]
, 2015 We announce the finished genome sequence of soil forest isolate Collimonas arenae Cal35, which comprises a 5.6-Mbp chromosome and 41-kb plasmid. The Cal35 genome is the second one published for the bacterial genus Collimonas and represents the first ...
de Jager, Victor CL +3 more
core +2 more sources
Advanced Materials Interfaces, EarlyView., 2023 This review discusses the use of Surface‐Enhanced Raman Spectroscopy (SERS) combined with Artificial Intelligence (AI) for detecting antimicrobial resistance (AMR). Various SERS studies used with AI techniques, including machine learning and deep learning, are analyzed for their advantages and limitations.
Zakarya Al‐Shaebi +4 more
wiley +1 more source
Frontiers in Microbiology, 2018 Staphylococcus aureus is a major human pathogen with well-characterized bacteriophage contributions to its virulence potential. Recently, we identified plasmidial and episomal prophages in S.
Douglas R. Deutsch +5 more
doaj +1 more source
Genomics and Bacterial Pathogenesis [PDF]
Emerging Infectious Diseases, 2000 Whole-genome sequencing is transforming the study of pathogenic bacteria. Searches for single virulence genes can now be performed on a genomewide scale by a variety of computer and genetic techniques. These techniques are discussed to provide a perspective on the developing field of genomics.
openaire +4 more sources
Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing
PLoS Computational Biology, 2023 A perfect bacterial genome assembly is one where the assembled sequence is an exact match for the organism’s genome—each replicon sequence is complete and contains no errors. While this has been difficult to achieve in the past, improvements in long-read
Ryan R. Wick +2 more
doaj +2 more sources
One bacterial cell, one complete genome. [PDF]
PLoS ONE, 2010 While the bulk of the finished microbial genomes sequenced to date are derived from cultured bacterial and archaeal representatives, the vast majority of microorganisms elude current culturing attempts, severely limiting the ability to recover complete ...
Tanja Woyke +12 more
doaj +1 more source
B-assembler: a circular bacterial genome assembler
BMC Genomics, 2022 Background Accurate bacteria genome de novo assembly is fundamental to understand the evolution and pathogenesis of new bacteria species. The advent and popularity of Third-Generation Sequencing (TGS) enables assembly of bacteria genomes at an ...
Fengyuan Huang +7 more
doaj +1 more source
Frontiers in Microbiology, 2019 The co-production of MCR and carbapenemase in Enterobacteriaceae has been previously reported. Here, we describe a clinical strain of Escherichia coli from Vietnam carrying both mcr-1 and blaNDM–1.
Hong-Ngoc Le-Vo +9 more
doaj +1 more source
Bacterial genome mapper: A comparative bacterial genome mapping tool [PDF]
Bioinformation, 2012 Recently, next generation sequencing (NGS) technologies have led to a revolutionary increase in sequencing speed and costefficacy. Consequently, a vast number of contigs from many recently sequenced bacterial genomes remain to be accurately mapped and annotated, requiring the development of more convenient bioinformatics programs.
Seong Hyeuk Nam +12 more
openaire +2 more sources
Genome sequence of Christensenella minuta DSM 22607T [PDF]
, 2017 Obesity influences and is influenced by the human gut microbiome. Here, we present the genome of Christensenella minuta, a highly heritable bacterial species which has been found to be strongly associated with obesity through an unknown biological ...
Hallsworth-Pepin, Kymberlie +4 more
core +2 more sources