Results 21 to 30 of about 1,891,272 (273)

Genomic Characterisation of Vinegar Hill Virus, An Australian Nairovirus Isolated in 1983 from Argas Robertsi Ticks Collected from Cattle Egrets

Viruses, 2017
This report describes the near complete genomic sequence and subsequent analysis of Vinegar Hill virus (VINHV; tentative member of the genus Orthonairovirus, family Nairoviridae, order Bunyavirales). VINHV is the second nairovirus reported to be isolated
Penelope J. Gauci, Jane McAllister, Ian R. Mitchell, Daisy Cybinski, Toby St George, Aneta J. Gubala   +5 more
doaj   +1 more source

Comparative Genomics Discloses the Uniqueness and the Biosynthetic Potential of the Marine Cyanobacterium Hyella patelloides

Frontiers in Microbiology, 2020
Baeocytous cyanobacteria (Pleurocapsales/Subsection II) can thrive in a wide range of habitats on Earth but, compared to other cyanobacterial lineages, they remain poorly studied at genomic level.
Ângela Brito, Ângela Brito, Jorge Vieira, Jorge Vieira, Cristina P. Vieira, Cristina P. Vieira, Tao Zhu, Pedro N. Leão, Vitor Ramos, Xuefeng Lu, Xuefeng Lu, Vitor M. Vasconcelos, Vitor M. Vasconcelos, Muriel Gugger, Paula Tamagnini, Paula Tamagnini, Paula Tamagnini   +16 more
doaj   +1 more source

GenomeFingerprinter and universal genome fingerprint analysis for systematic comparative genomics [PDF]

, 2013
How to compare whole genome sequences at large scale has not been achieved via conventional methods based on pair-wisely base-to-base comparison; nevertheless, no attention was paid to handle in-one-sitting a number of genomes crossing genetic category (chromosome, plasmid, and phage) with farther divergences (much less or no homologous) over large ...
arxiv   +1 more source

Comparative Genomic Analysis of the Class Epsilonproteobacteria and Proposed Reclassification to Epsilonbacteraeota (phyl. nov.)

Frontiers in Microbiology, 2017
The Epsilonproteobacteria is the fifth validly described class of the phylum Proteobacteria, known primarily for clinical relevance and for chemolithotrophy in various terrestrial and marine environments, including deep-sea hydrothermal vents.
Philip Hugenholtz, David W. Waite, Inka Vanwonterghem, Christian Rinke, Donovan H. Parks, Ying Zhang, Ken Takai, Stefan M. Sievert, Jörg Simon, Barbara J. Campbell, Thomas E. Hanson, Tanja Woyke, Martin G. Klotz, Martin G. Klotz   +13 more
doaj   +1 more source

CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods

Genome Biology
Background The Critical Assessment of Genome Interpretation (CAGI) aims to advance the state-of-the-art for computational prediction of genetic variant impact, particularly where relevant to disease.
The Critical Assessment of Genome Interpretation Consortium
doaj   +1 more source

Unambiguosly expressing expectations about the content of prokaryotic genomes [PDF]

arXiv, 2023
In recent years, the sequencing, assembling and annotation of prokaryotic genomes has become increasingly easy and cheap. Thus it becomes increasingly feasible and interesting to perform comparative genomics analyses of new genomes to those of related organisms.
arxiv  

Detailed kinship estimation for detecting bias among breeding families in a reintroduced population of the endangered bagrid catfish Tachysurus ichikawai

Population Ecology, EarlyView.
In the process of captive breeding and reintroduction of endangered animal species, it is crucial to minimize familial bias in reproductive success during the reintroduction phase to preserve genetic diversity. In this study, we attempted to identify the familial lineage of individuals of the endangered bagrid fish Tachysurus ichikawai born at the ...
Hinano Mizuno, Kouji Nakayama, Tetsuya Akita, Yasuyuki Hashiguchi, Tomonori Osugi, Hirohiko Takeshima   +5 more
wiley   +1 more source

Validation of a guidelines-based digital tool to assess the need for germline cancer genetic testing

Hereditary Cancer in Clinical Practice
Background Efficient and scalable solutions are needed to identify patients who qualify for germline cancer genetic testing. We evaluated the clinical validity of a brief, patient-administered hereditary cancer risk assessment digital tool programmed to ...
Callan D. Russell, Ashley V. Daley, Durand R. Van Arnem, Andi V. Hila, Kiley J. Johnson, Jill N. Davies, Hanah S. Cytron, Kaylene J. Ready, Cary M. Armstrong, Mark E. Sylvester, Colleen A. Caleshu   +10 more
doaj   +1 more source

FLIM-MAP: Gene Context Based Identification of Functional Modules in Bacterial Metabolic Pathways

Frontiers in Microbiology, 2018
Prediction of functional potential of bacteria can only be ascertained by the accurate annotation of its metabolic pathways. Homology based methods decipher metabolic gene content but ignore the fact that homologs of same protein can function in ...
Vineet Bhatt, Anwesha Mohapatra, Swadha Anand, Bhusan K. Kuntal, Bhusan K. Kuntal, Sharmila S. Mande   +5 more
doaj   +1 more source

Accelerating Genome Analysis via Algorithm-Architecture Co-Design [PDF]

arXiv, 2023
High-throughput sequencing (HTS) technologies have revolutionized the field of genomics, enabling rapid and cost-effective genome analysis for various applications. However, the increasing volume of genomic data generated by HTS technologies presents significant challenges for computational techniques to effectively analyze genomes.
arxiv