Results 71 to 80 of about 2,597,991 (390)

A chromosome-level genome assembly of tomato pinworm, Tuta absoluta

Scientific Data, 2023
The tomato pinworm, Tuta absoluta, or Phthorimaea absouta, is native to South America, but quickly spread to other regions of world, including Europe, Africa, and Asia, devastating to global tomato production.
Ying Liu, Xi Chen, Yanqiong Yin, Xiaowei Li, Kang He, Xueqing Zhao, Xiangyong Li, Xiyan Luo, Yang Mei, Zuoqi Wang, Runguo Shu, Ziqi Cheng, Kifle Gebreegziabiher Gebretsadik, Chen Luo, Ran Wang, Yaobin Lv, Aidong Chen, Fei Li   +17 more
doaj   +1 more source

Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome

Nature Biotechnology, 2019
The DNA sequencing technologies in use today produce either highly accurate short reads or less-accurate long reads. We report the optimization of circular consensus sequencing (CCS) to improve the accuracy of single-molecule real-time (SMRT) sequencing (
A. Wenger, P. Peluso, W. Rowell, Pi-Chuan Chang, R. Hall, G. Concepcion, Jana Ebler, Arkarachai Fungtammasan, Alexey Kolesnikov, Nathan D. Olson, A. Töpfer, Michael Alonge, M. Mahmoud, Yufeng Qian, C. Chin, A. Phillippy, M. Schatz, G. Myers, M. DePristo, Jue Ruan, T. Marschall, F. Sedlazeck, J. Zook, Heng Li, S. Koren, Andrew Carroll, D. Rank, M. Hunkapiller   +27 more
semanticscholar   +1 more source

Deciphering the genome structure and paleohistory of _Theobroma cacao_ [PDF]

, 2010
We sequenced and assembled the genome of _Theobroma cacao_, an economically important tropical fruit tree crop that is the source of chocolate. The assembly corresponds to 76% of the estimated genome size and contains almost all previously described ...
Angé, Ange Marie Risterucci, Anne Dievart, Auré, Bertrand Pitollat, Christopher Viot, Claire Lanaud, Cristian Chaparro, Dave Kudrna, Didier Clement, Diogenes Infante, Dominique Brunel, Emmanuel Guiderdoni, Erika Sallet, Florent Murat, Francis Quetier, Francois Sabot, Gaetan Droc, Ismael Kebe, Jean Marc Aury, Jerome Gouzy, Jerome Salse, Jetty Siva S. Ammiraju, John E. Carlson, Jose Fernandes Barbosa-Neto, Joseph Moroh Akaza, Julie Poulain, Karina Gramacho, Laura Gelley, Maguy Rodier-Goud, Manuel Ruiz, Mark Guiltinan, Mathias Tahi, Mathilde Allegre, Melissa Kramer, Michael Abrouk, Michael Axtell, Michel Boccara, Mickael Bourge, Olivier Fouet, Olivier Panaud, Patrick Wincker, Pierre Costet, Rod Wing, Ronan Rivalan, Schiex T., Siela Maximova, Spencer Brown, Stephan C. Schuster, Stephanie Sidibe-Bocs, Thierry Legavre, Valentin Guignon, W. Richard McCombie, Wolfgang Golser, Xavier Argout, Xavier Sabau, Xiang Song, Yolande Roguet, Yufan Zhang, Zhaorong Ma, Zi Sh   +60 more
core   +2 more sources

Integrating genome assemblies with MAIA [PDF]

Bioinformatics, 2010
Abstract Motivation:  De novo assembly of a eukaryotic genome with next-generation sequencing data is still a challenging task. Over the past few years several assemblers have been developed, often suitable for one specific type of sequencing data.
Nijkamp, J.F. (author), Winterbach, W. (author), Van den Broek, M. (author), Daran, J.M. (author), Reinders, M.J.T. (author), De Ridder, D. (author)   +5 more
openaire   +4 more sources

GTasm: a genome assembly method using graph transformers and HiFi reads

Frontiers in Genetics
MotivationGenome assembly aims to reconstruct the whole chromosome-scale genome sequence. Obtaining accurate and complete chromosome-scale genome sequence serve as an indispensable foundation for downstream genomics analyses.
Junwei Luo, Ziheng Zhang, Xinliang Ma, Chaokun Yan, Huimin Luo   +4 more
doaj   +1 more source

Tools and pipelines for BioNano data: molecule assembly pipeline and FASTA super scaffolding tool [PDF]

, 2015
Citation: Shelton, J. M., Coleman, M. C., Hemdon, N., Lu, N. Y., Lam, E. T., Anantharaman, T., . . . Brown, S. J. (2015). Tools and pipelines for BioNano data: molecule assembly pipeline and FASTA super scaffolding tool. Bmc Genomics, 16, 16. doi:10.1186/
Anantharaman, T., Brown, Susan J., Coleman, M. C., Hemdon, N., Lam, E. T., Lu, N. Y., Shelton, J. M., Sheth, P.   +7 more
core   +2 more sources

GAM: Genomic Assemblies Merger

EMBnet.journal, 2012
Motivations. In the last 3 years more than 20 assemblers have been proposed to tackle the hard task of assembling. Recent evaluation efforts (Assemblathon 1 and GAGE) demonstrated that none of these tools clearly outperforms the others. However, results clearly show that some assemblers performs better than others on specific regions and statistics ...
A Policriti, S Scalabrin, F Vezzi, R Vicedomini   +3 more
openaire   +3 more sources

Chromosome-level reference genome assembly for the mountain hare (Lepus timidus)

Peer Community Journal
We present here a high-quality genome assembly of a male mountain hare (Lepus timidus Linnaeus), from Ilomantsi, Eastern Finland, utilizing an isolated fibroblast cell line as the source for high quality DNA and RNA.
Fekete, Zsófia, Absolon, Dominic E., Michell, Craig, Wood, Jonathan M. D., Goffart, Steffi, Pohjoismäki, Jaakko L. O.   +5 more
doaj   +1 more source

The genome sequence of the Common Brassy Ringlet, Erebia cassioides (Reiner & Hohenwarth, 1792) (Lepidoptera, Nymphalidae) [PDF]

Research Ideas and Outcomes
We present a chromosome-level genome assembly from a female specimen of the Common Brassy Ringlet Erebia cassioides (Arthropoda, Insecta, Lepidoptera, Nymphalidae).
Camille Cornet, Kay Lucek
doaj   +3 more sources

Assembly of long, error-prone reads using repeat graphs

Nature Biotechnology, 2018
Accurate genome assembly is hampered by repetitive regions. Although long single molecule sequencing reads are better able to resolve genomic repeats than short-read data, most long-read assembly algorithms do not provide the repeat characterization ...
M. Kolmogorov, Jeffrey Yuan, Yu Lin, P. Pevzner   +3 more
semanticscholar   +1 more source