Results 71 to 80 of about 1,940,445 (217)

Expanding the Utility of Bioinformatic Data for the Full Stereostructural Assignments of Marinolides A and B, 24- and 26-Membered Macrolactones Produced by a Chemically Exceptional Marine-Derived Bacterium

open access: yesMarine Drugs, 2023
Marinolides A and B, two new 24- and 26-membered bacterial macrolactones, were isolated from the marine-derived actinobacterium AJS-327 and their stereostructures initially assigned by bioinformatic data analysis.
Min Cheol Kim   +4 more
doaj   +1 more source

ARTS 2.0: feature updates and expansion of the Antibiotic Resistant Target Seeker for comparative genome mining

open access: yesNucleic Acids Res., 2020
Multi-drug resistant pathogens have become a major threat to human health and new antibiotics are urgently needed. Most antibiotics are derived from secondary metabolites produced by bacteria.
Mehmet Direnç Mungan   +5 more
semanticscholar   +1 more source

Data mining parasite genomes

open access: yesParasitology, 2004
The term ‘data mining’ can be used to describe any process where useful information is extracted from data with a large background of ‘noise’. In the context of a genome project, several stages involve data mining. Amongst the sequence data, ‘signals’ need to be detected that indicate the presence of interesting features.
openaire   +2 more sources

Out for a RiPP: challenges and advances in genome mining of ribosomal peptides from fungi.

open access: yesNatural product reports (Print), 2021
Covering up to June 2021Ribosomally synthesized and post-translationally modified peptides (RiPPs) from fungi are an underexplored class of natural products, despite their propensity for diverse bioactivities and unique structural features.
Simon C. Kessler, Y. Chooi
semanticscholar   +1 more source

WormBase: A modern Model Organism Information Resource [PDF]

open access: yes, 2020
WormBase (https://wormbase.org/) is a mature Model Organism Information Resource supporting researchers using the nematode Caenorhabditis elegans as a model system for studies across a broad range of basic biological processes.
et al,, Harris, Todd W, Schedl, Tim
core   +1 more source

Unveiling combinatorial regulation through the combination of ChIP information and in silico cis-regulatory module detection [PDF]

open access: yes, 2012
Computationally retrieving biologically relevant cis-regulatory modules (CRMs) is not straightforward. Because of the large number of candidates and the imperfection of the screening methods, many spurious CRMs are detected that are as high scoring as ...
Fierro, Ana Carolina   +5 more
core   +2 more sources

Tuning the Sensitivity of Genetically Encoded Fluorescent Potassium Indicators through Structure-Guided and Genome Mining Strategies

open access: yesbioRxiv, 2021
Genetically encoded potassium indicators lack optimal binding affinity for monitoring intracellular dynamics in mammalian cells. Through structure-guided design and genome mining of potassium binding proteins, we developed green fluorescent potassium ...
Cristina C. Torres Cabán   +7 more
semanticscholar   +1 more source

A mass spectrometry-guided genome mining approach for natural product peptidogenomics. [PDF]

open access: yes, 2011
Peptide natural products show broad biological properties and are commonly produced by orthogonal ribosomal and nonribosomal pathways in prokaryotes and eukaryotes.
Cimermancic, Peter   +8 more
core  

Mining the chicken genome [PDF]

open access: yesGenome Biology, 2002
The chicken EST repository gives access to a BLAST server dedicated to mining recently released sequence information from the chick large-scale expressed sequence tag (EST ...
openaire   +1 more source

Genome Mining and Characterization of Biosynthetic Gene Clusters in Two Cave Strains of Paenibacillus sp.

open access: yesFrontiers in Microbiology, 2021
The genome sequencing and mining of microorganisms from unexplored and extreme environments has become important in the process of identifying novel biosynthetic pathways. In the present study, the biosynthetic potential of Paenibacillus sp.
J. Lebedeva   +5 more
semanticscholar   +1 more source

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