Results 71 to 80 of about 1,743,586 (380)

The potential of text mining in data integration and network biology for plant research : a case study on Arabidopsis [PDF]

open access: yes, 2013
Despite the availability of various data repositories for plant research, a wealth of information currently remains hidden within the biomolecular literature. Text mining provides the necessary means to retrieve these data through automated processing of
De Bodt, Stefanie   +4 more
core   +2 more sources

Genome mining based discovery of the cyclic peptide tolypamide and TolF, a Ser/Thr forward O-prenyltransferase.

open access: yesAngewandte Chemie, 2021
Cyanobactins comprise a widespread group of peptide metabolites produced by cyanobacteria that are often diversified by post-translational prenylation.
M. Purushothaman   +5 more
semanticscholar   +1 more source

Web2.0 paves new ways for collaborative and exploratory analysis of Chemical Compounds in Spectrometry Data

open access: yesJournal of Integrative Bioinformatics, 2011
In nowadays life science projects, sharing data and data interpretation is becoming increasingly important. This considerably calls for novel information technology approaches, which enable the integration of expert knowledge from different disciplines ...
Loyek Christian   +3 more
doaj   +1 more source

Genome Mining and Characterization of Biosynthetic Gene Clusters in Two Cave Strains of Paenibacillus sp.

open access: yesFrontiers in Microbiology, 2021
The genome sequencing and mining of microorganisms from unexplored and extreme environments has become important in the process of identifying novel biosynthetic pathways. In the present study, the biosynthetic potential of Paenibacillus sp.
J. Lebedeva   +5 more
semanticscholar   +1 more source

Deep Biological Pathway Informed Pathology-Genomic Multimodal Survival Prediction [PDF]

open access: yesarXiv, 2023
The integration of multi-modal data, such as pathological images and genomic data, is essential for understanding cancer heterogeneity and complexity for personalized treatments, as well as for enhancing survival predictions. Despite the progress made in integrating pathology and genomic data, most existing methods cannot mine the complex inter ...
arxiv  

Mining the genome for lipid genes

open access: yesBiochimica et Biophysica Acta (BBA) - Molecular Basis of Disease, 2014
AbstractMining of the genome for lipid genes has since the early 1970s helped to shape our understanding of how triglycerides are packaged (in chylomicrons), repackaged (in very low density lipoproteins; VLDL), and hydrolyzed, and also how remnant and low-density lipoproteins (LDL) are cleared from the circulation.
Kuivenhoven, Jan Albert   +1 more
openaire   +5 more sources

Genome Insights into the Novel Species Microvirga brassicacearum, a Rapeseed Endophyte with Biotechnological Potential

open access: yesMicroorganisms, 2019
Plants harbor a diversity of microorganisms constituting the plant microbiome. Many bioinoculants for agricultural crops have been isolated from plants.
Alejandro Jiménez-Gómez   +5 more
doaj   +1 more source

Overexpression of Global Regulator PbrlaeA Leads to the Discovery of New Polyketide in Fungus Penicillium Brocae HDN-12-143

open access: yesFrontiers in Chemistry, 2020
Overexpression of the PbrlaeA gene of the fungus Penicillium brocae HDN-12-143 resulted in the isolation of four compounds including fumigatin chlorohydrin (1), whose configuration has not been reported before, and one new compound iso-fumigatin ...
Lu Wang   +9 more
doaj   +1 more source

Genomics-Driven Activation of Silent Biosynthetic Gene Clusters in Burkholderia gladioli by Screening Recombineering System

open access: yesMolecules, 2021
The Burkholderia genus possesses ecological and metabolic diversities. A large number of silent biosynthetic gene clusters (BGCs) in the Burkholderia genome remain uncharacterized and represent a promising resource for new natural product discovery ...
Hanna Chen   +11 more
doaj   +1 more source

Genetically Improved BarraCUDA [PDF]

open access: yesBioData Mining 10:28, 2 August, 2017, 2015
BarraCUDA is a C program which uses the BWA algorithm in parallel with nVidia CUDA to align short next generation DNA sequences against a reference genome. The genetically improved (GI) code is up to three times faster on short paired end reads from The 1000 Genomes Project and 60percent more accurate on a short BioPlanet.com GCAT alignment benchmark ...
arxiv   +1 more source

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