Results 21 to 30 of about 1,118,249 (314)
Application of massive parallel sequencing to whole genome SNP discovery in the porcine genome [PDF]
, 2009 Background Although the Illumina 1 G Genome Analyzer generates billions of base pairs of sequence data, challenges arise in sequence selection due to the varying sequence quality.Kerstens Hindrik HD, Heuven, H.C.M., Johan T den Dunnen, Henri CM Heuven, Andreia J Amaral, den Dunnen Johan T, Dibbits Bert, Groenen Martien AM, Heuven Henri CM, Megens, H.J.W.C., Amaral Andreia J, Megens Hendrik-Jan, Bert Dibbits, Martien AM Groenen, Groenen, M.A.M., Hendrik-Jan Megens, Dibbits, B.W., Dungen, J., den, Kerstens, H.H.D., Hindrik HD Kerstens, Richard PMA Crooijmans, Crooijmans, R.P.M.A., den Dungen, J., Crooijmans Richard PMA, Amaral, A.J. +24 morecore +1 more sourceGenomic sequencing in cancer [PDF]
Cancer Letters, 2013 Genomic sequencing has provided critical insights into the etiology of both simple and complex diseases. The enormous reductions in cost for whole genome sequencing have allowed this technology to gain increasing use. Whole genome analysis has impacted research of complex diseases including cancer by allowing the systematic analysis of entire genomes ...Musaffe, Tuna, Christopher I, Amosopenaire +2 more sourcesIdentifying predictive features of Clostridium difficile infection recurrence before, during, and after primary antibiotic treatment
Microbiome, 2017 Background Colonization by the pathogen Clostridium difficile often occurs in the background of a disrupted microbial community. Identifying specific organisms conferring resistance to invasion by C.Sepideh Pakpour, Amit Bhanvadia, Roger Zhu, Abhimanyu Amarnani, Sean M. Gibbons, Thomas Gurry, Eric J. Alm, Laura A. Martello +7 moredoaj +1 more sourceRoutine use of microbial whole genome sequencing in diagnostic and public health microbiology [PDF]
, 2012 This work is partly supported by funding from the Medical Research Council, the European Developing Country Clinical Trials Partnership, the Global Alliance for TB Drug Development, and the European Union.Whole genome sequencing (WGS) promises to be ...Holden, MTG, Matthew T G Holden, Mark Farrington (148224), Cartwright, EJP, Matthew T. G. Holden (130258), Brown, Nicholas M., Sharon J Peacock, Bentley, SD, Ellington, Matthew J., Claudio U Köser, Parkhill, J, Stephen D. Bentley (137281), Stephen H Gillespie, Stephen D Bentley, Köser, CU, Bentley, Stephen D., Julian Parkhill (30393), Holden, Matthew T. G., Julian Parkhill, Peacock, Sharon J., Edward J. P. Cartwright (148213), Koeser, Claudio U., Peacock, SJ, Stephen H. Gillespie (148218), Edward J P Cartwright, Gordon Dougan, Matthew J. Ellington (148208), Farrington, M, Cartwright, Edward J. P., Dougan, Gordon, Nicholas M Brown, Parkhill, Julian, Mark Farrington, Gordon Dougan (30395), Farrington, Mark, Claudio U. Köser (148202), Gillespie, Stephen H., Matthew J Ellington, Brown, NM, Sharon J. Peacock (35782), Gillespie, SH, Ellington, MJ, Nicholas M. Brown (148222), Dougan, G +43 morecore +1 more sourceFour chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
Nature Communications, 2021 Pecan is an important specialty crop that has experienced extensive interspecific hybridization and nearly-obligate outcrossing. Here, the authors assemble diploid genomes of four outbred genotypes, identify interspecific introgressions through ...John T. Lovell, Nolan B. Bentley, Gaurab Bhattarai, Jerry W. Jenkins, Avinash Sreedasyam, Yanina Alarcon, Clive Bock, Lori Beth Boston, Joseph Carlson, Kimberly Cervantes, Kristen Clermont, Sara Duke, Nick Krom, Keith Kubenka, Sujan Mamidi, Christopher P. Mattison, Maria J. Monteros, Cristina Pisani, Christopher Plott, Shanmugam Rajasekar, Hormat Shadgou Rhein, Charles Rohla, Mingzhou Song, Rolston St. Hilaire, Shengqiang Shu, Lenny Wells, Jenell Webber, Richard J. Heerema, Patricia E. Klein, Patrick Conner, Xinwang Wang, L. J. Grauke, Jane Grimwood, Jeremy Schmutz, Jennifer J. Randall +34 moredoaj +1 more sourceA Complete Mitochondrial Genome Sequence from a Mesolithic Wild Aurochs (Bos primigenius) [PDF]
, 2010 Background
The derivation of domestic cattle from the extinct wild aurochs (Bos primigenius) has been well-documented by archaeological and genetic studies.Finlay Emma K., Park Stephen D. E., Daniel G Bradley, Shapiro Beth, Edwards Ceiridwen J., Ceiridwen J Edwards, Murphy, A., MacHugh David E., Beth Shapiro, Edwards, C.J., Bradley Daniel G., Park, S.D.E., MacHugh, D.E., McGettigan, Paul A., Shapiro, Beth, Alison Murphy, Martin B Richards, Chamberlain Andrew T., Loftus Brendan J., Murphy, Alison, Bradley, D.G., Knapp, Michael, David A Magee, Amanda J Lohan, Magee David A., Stephen D E Park, Lohan, A.J., Shapiro, B., Magee, David A., Bradley, Daniel G., Brendan J Loftus, Richards Martin B., Richards, M.B., Paul A McGettigan, Loftus, Brendan J., Park, Stephen D E, David E MacHugh, Chamberlain, Andrew T., Murphy Alison, MacHugh, David E., Andrew T Chamberlain, Park, Stephen D. E., Lohan, Amanda J., Lohan Amanda J., Loftus, B.J., Finlay, Emma K., McGettigan, P.A., Finlay, E.K., Richards, Martin B., Magee, D.A., Emma K Finlay, McGettigan Paul A., Chamberlain, A.T., Edwards, Ceiridwen J. +53 morecore +1 more sourceOf Mice and Genome Sequence [PDF]
Cell, 2001 Availability of the mouse genome sequence will have a major impact on the study of vertebrate evolution, mammalian biology, and animal models of human disease. Resources to explore genome biology in mice will maximize the effect of this watershed event.Hamilton, B A, Frankel, W Nopenaire +2 more sourcesHidden biases in germline structural variant detection
Genome Biology, 2021 Background Genomic structural variations (SV) are important determinants of genotypic and phenotypic changes in many organisms. However, the detection of SV from next-generation sequencing data remains challenging.Michael M. Khayat, Sayed Mohammad Ebrahim Sahraeian, Samantha Zarate, Andrew Carroll, Huixiao Hong, Bohu Pan, Leming Shi, Richard A. Gibbs, Marghoob Mohiyuddin, Yuanting Zheng, Fritz J. Sedlazeck +10 moredoaj +1 more sourceThe South Asian Genome [PDF]
, 2014 The genetic sequence variation of people from the Indian subcontinent who comprise one-quarter of the world's population, is not well described. We carried out whole genome sequencing of 168 South Asians, along with whole-exome sequencing of 147 South ...Li Yingrui, Afaq, S, Elliott Paul, Aitman, Timothy J., Scott, WR, Jun Wang (5906), Vandrovcova, Jana, Gaulton, KJ, McCarthy, Mark I, Gaulton Kyle J., Northwood Korrinne, Turro, Ernest, Frank Geoghegan, Sehmi Joban, Elliott, Paul, Frank Geoghegan (614027), Saima Afaq (614013), Afzal, Uzma, Scott, William R, Chambers John C., Northwood, K, Jun Wang, Jagvir Grewal, Grewal Jagvir, Kooner, Jaspal, Alexandra M Lewin, Afzal, U, Jaspal S. Kooner (163553), Butcher, S, Al-hussaini, Abtehale, Mills Rebecca, Wang, J, Afaq, Saima, Chambers, John, Lewin, Alexandra M, Chambers, John C, Vandrovcova Jana, Zhang, W, Korrinne Northwood (614026), Rebecca Mills (614022), Gaulton, Kyle J., Gurpreet S. Wander (163534), Laticia Oozageer (614019), James Abbott, Timothy J Aitman, Mark I. McCarthy (145748), Oozageer, L, Uzma Afzal, Sarah Butcher, Yingrui Li (149030), Joban Sehmi (245407), Kooner, IK, Mccarthy, Mark I., Sehmi, Joban, Al-Hussaini Abtehale, Weihua Zhang, Kooner Jaspal S., Loh, Marie, Lavery Anita, Saima Afaq, Jana Vandrovcova, William R Scott, Vasileios Panoulas, Grewal, Jagvir, Wass, MN, Alexandra M. Lewin (614025), Turro Ernest, Chambers, JC, Lavery, A, James Scott (40922), Uzma Afzal (614012), Turro, E, Lewin, AM, Grewal, J, McCarthy, MI, Weihua Zhang (44940), Ernest Turro (85076), McCarthy Mark I., Scott, James, Lehne, B, Sian-Tsung Tan, Jaspal S Kooner, Afaq Saima, Tan Sian-Tsung, Jana Vandrovcova (90909), Wang Jun, Laticia Oozageer, Pearson, Richard D, Richard D. Pearson (614015), Wander Gurpreet S., Gurpreet S Wander, Tan, ST, Abtehale Al-Hussaini (614021), Marie Loh, Ishminder K. Kooner (614020), Wang, Jun, Butcher, Sarah, Pearson, RD, Ishminder K Kooner, Abbott, J, Kyle J. Gaulton (277252), Kooner Ishminder K., Benjamin Lehne (215790), Li, Y, Aitman, TJ, Li, X, Anita Lavery, Lavery, Anita, Lewin Alexandra M., Abbott, James, William R. Scott (391938), Pearson Richard D., Vasileios Panoulas (614024), Kooner, Jaspal S, Jagvir Grewal (614023), Oozageer, Laticia, Lewin, Alexandra M., Miller Kathryn, Xinzhong Li, Aitman Timothy J., Sarah Butcher (204203), Northwood, Korrinne, Miller, Kathryn, Wass, Mark N, Lehne Benjamin, Scott, J, Abbott, James; id_orcid, Lehne, Benjamin, Kathryn Miller (614018), Sian-Tsung Tan (614011), Kooner, Ishminder K, James Abbott (614010), Panoulas Vasileios, Li Xinzhong, Richard D Pearson, Kyle J Gaulton, Elliott, P, Geoghegan Frank, Paul Elliott, Panoulas, Vasileios, Wander, Gurpreet S, Al-Hussaini, A, O'Reilly, P, Aitman, Timothy J, Li, Yingrui, James Scott, Kooner, Jaspal S., Abbott James, Wass Mark N., Kooner, JS, Vandrovcova, J, Marie Loh (6467), O'reilly, Paul, Oozageer Laticia, Chambers, John C., Ernest Turro, Panoulas, V, Wass, Mark N., Zhang Weihua, Yingrui Li, Scott, William R., Scott William R., Loh Marie, O'Reilly Paul, Korrinne Northwood, Rebecca Mills, John C Chambers, Tan, Sian-tsung, Zhang, Weihua, Paul O'Reilly (614014), Butcher Sarah, Sehmi, J, Paul O'Reilly, Mark N. Wass (614017), Li, Xinzhong, Mark I McCarthy, Mills, Rebecca, Tan, S-T, Paul Elliott (27295), Afzal Uzma, Benjamin Lehne, Wander, Gurpreet S., Abtehale Al-Hussaini, Mills, R, Zhi, Degui, Timothy J. Aitman (250706), Wander, GS, Pearson, Richard D., Loh, M, John C. Chambers (163544), Anita Lavery (614016), Scott James, Geoghegan, F, Mark N Wass, Gaulton, Kyle J, Miller, K, Xinzhong Li (430872), Kathryn Miller, Kooner, Ishminder K., Geoghegan, Frank, Joban Sehmi +200 morecore +1 more sourceMulti-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis [PDF]
, 2010 A synergistic combination of two next-generation sequencing platforms with a detailed comparative BAC physical contig map provided a cost-effective assembly of the genome sequence of the domestic turkey (Meleagris gallopavo).Kent M Reed, Zhang, Liqing, Zhang Hong-Bin, Kim, Heebal, Rami A Dalloul, Langenberger, D., Scheuring, C., Evans, Clive, Crooijmans, R. P. M. A., Lee, Mi-Kyung, Lee, Taeheon, Kim, H., Evans, C., Nefedov Mikhail, Mane, Shrinivasrao, Frederickson, K. M., Crooijmans, Richard P. M. A., Williams, K. P., Marz, M., Liqing Zhang, Paul Flicek, Dodgson, J. B., David Langenberger, Smith Jacqueline, Dodgson, J. B., Flicek, Paul, Dong, J. J., Jiang, A., Kim, K. W., Zhang Yang, Kim, H., Manja Marz, Long, J. A., Williams, Kelly P., Schatz Michael C., Julie A. Long, Raineri Emanuele, Folkerts, O., Otto Folkerts, Zhang, H.-B., McElroy, A. P., Zhang, L., Delany, Mary E., Long, Julie A., Kelly P. Williams, McElroy Audrey P., Paton, I. R., Beal Kathryn, de Jong, P., Vilella, A. J., Yorke, J. A., Vilella Albert J., Salzberg, Steven L., Harkins Tim T., Megens, H.-J., Kim Sungwon, Crasta Oswald, Burt, David W., Bouffard Pascal, Schroeder, S., Albert J. Vilella, Burt, D. W., Liliana Florea, Mane Shrinivasrao, Carl J. Schmidt, Modise, Thero, Harkins, T. T., Jacqueline Smith, Frederickson, Karin M., Kristal Cooper, Stadler Peter F., Martien A. M. Groenen, Steven L. Salzberg, van Tassell, C. P., Smith, E. J., Blomberg, L. A., Modise, T., Tafer, Hakim, Schmidt, C. J., William S Payne, Dong, Jennifer J., Florea Liliana, Vilella, A. J., Notredame, C., Lee, M. K., Smith, J., Kathryn Beal, Jiang, A., Bouffard, Pascal, Geo Pertea, Mi-Kyung Lee, Mane, S., Roberts, Richard J., Delany, M. E., Jerry B. Dodgson, Schmidt, Carl J., Pertea, Geo, Searle Stephen M. J., Williams, K. P., Frederickson Karin M., Beal, K., Tim T Harkins, Lee, T., Langenberger, David, Searle, S. M. J., Ruffier, M., Puiu, D., Dalloul, R. A., Van Tassell, C. P., Schatz, M. C., Julie A Long, Jennifer J Dong, Raineri, E., Modise Thero, Long Julie A., Reed, Kent M., De, Supriyo, Oswald Crasta, Zimin, Aleksey V., Folkerts, O., Zhang, Y., Schroeder Steven, Roger A Coulombe, Hoffmann Steve, Crasta, Oswald, McElroy, Audrey P., Tu, Zhijian Jake, Florea, L., Magali Ruffier, de, J. P., Curtis P. Van Tassell, Williams Kelly P., William S. Payne, Megens, H. J., Zhang, X., Bouffard, P., James A Yorke, Kaiser, Pete, Daniela Puiu, Stephen M. J. Searle, Modise, T., Notredame Cédric, Groenen, M. A. M., Hoffmann, Steve, Notredame, C��dric, Ruffier Magali, Taeheon Lee, Guillaume Marcais, Evans Clive, Le Ann Blomberg, Qioa, Dan, Herrero Javier, Zhang Liqing, Crooijmans, R. P., Kim, S., Evans, C., Prickett, Dennis, Groenen, M. A., Cooper, K., Tu, Z. J., Dalloul, R.A., De Supriyo, Kaiser, P., Schmidt, C. J., Van Tassell Curtis P., Tafer, H., Megens, Hendrik-Jan, Mane, Shrinivasrao P., Tafer, H., Marcais, G., Xiaojun Zhang, Crasta, O., Kyu-Won Kim, Dodgson Jerry B., Aleksey V. Zimin, Reed, K. M., Steve Hoffmann, Tu, Zhijian (Jake), Dalloul, Rami A., Ann Blomberg Le, Hoffmann, S., Zhang, Yang, David W Burt, Kent M. Reed, Pieter de Jong, Aslam, Luqman, Marz, M., Groenen, Martien A. M., Michael C Schatz, Zhijian Jake Tu, Burt David W., Pascal Bouffard, Pertea Geo, Richard P M A Crooijmans, Audrey P. McElroy, David W. Burt, Sonstegard, T. S., Marcais, G., Hakim Tafer, Smith, J., Zhang, H. B., Ruffier, Magali, Mikhail Nefedov, Albert J Vilella, Megens Hendrik-Jan, Clive Evans, Hendrik-Jan Megens, Kaiser Pete, Dennis Prickett, Puiu Daniela, Dan Qioa, Schroeder, S., Zhang, Hong-Bin, Zhang, Xiaojun, Audrey P McElroy, Zimin Aleksey V., Vilella, Albert J., Groenen, M. A. M., Martien A M Groenen, Coulombe, R. A., Supriyo De, Scheuring, C., Qioa, D., Van, T. C. P., Nefedov, M., Kim, K.-W., de Jong Pieter, McElroy, A. P., Folkerts, Otto, Yorke James A., Harkins, Tim T., Rami A. Dalloul, Zhijian (Jake) Tu, Lee Taeheon, Crooijmans, R.P.M.A., Searle, S. M., Megens, H. J., Edward J. Smith, Paton Ian R., Salzberg, S. L., Aleksey V Zimin, Cooper Kristal, Ian R. Paton, Emanuele Raineri, Langenberger David, Tu Zhijian (Jake), Long, J. A., Qioa, D., Coulombe, R. A., Pete Kaiser, Aslam Luqman, Mane, S., Delany, M. E., Schatz, M. C., Sonstegard Tad S., Marz, Manja, Payne, William S., Carl J Schmidt, Andrew Jiang, Tu, Z., James A. Yorke, Long, J.A., Kelly P Williams, Lee, T., Edward J Smith, Notredame, Cédric, Stadler, P. F., Aslam, L., Prickett Dennis, Zimin, A. V., Herrero, J., Searle, S. M. J., Burt, D. W., Luqman Aslam, Crasta, O., Langenberger, D., Kaiser, P., Stadler, P. F., Van Tassell, Curtis P., Schmidt Carl J., Sonstegard, Tad S., Marz Manja, Lee, M. K., Puiu, Daniela, Marcais Guillaume, Crooijmans Richard P. M. A., Blomberg, Le Ann, Groenen Martien A. M., de Jong, P., Ruffier, M., Tad S. Sonstegard, Dalloul, R. A., Jiang Andrew, Frederickson, K. M., Florea, Liliana, Aslam, M.L., Smith Edward J., de Jong, Pieter, Cédric Notredame, Kim, K. W., Searle, Stephen M. J., Smith, Jacqueline, Harkins, T. T., Smith, Edward J., Karin M Frederickson, Chantel Scheuring, Marcais, Guillaume, Dalloul Rami A., Curtis P Van Tassell, Kim, Kyu-Won, Kim, S., Mary E Delany, Hong-Bin Zhang, Michael C. Schatz, Scheuring, Chantel, Kim Kyu-Won, Jiang, Andrew, Payne, W. S., Folkerts Otto, Zhang, H. B., Zimin, A. V., Schroeder, Steven, Yorke, J. A., Megens, H.J.W.C., Heebal Kim, Payne, W. S., Ann Blomberg, Le, Beal, K., Smith, Jacqueline; id_orcid, Puiu, D., Reed, K. M., Crooijmans, R. P. M. A., Qioa Dan, Notredame, C., Pertea, G., Stephen M J Searle, Zhang Xiaojun, Prickett, D., Flicek, P., Salzberg, S. L., Karin M. Frederickson, Florea, L., Coulombe, Roger A., Smith, E. J., Delany Mary E., Scheuring Chantel, Sungwon Kim, Salzberg Steven L., Aslam, L., Jerry B Dodgson, Yang Zhang, Yorke, James A., Raineri, Emanuele, Paton, I. R., Bouffard, P., Tafer Hakim, Cooper, K., Dong, J. J., Nefedov, Mikhail, Kim Heebal, Cooper, Kristal, Roger A. Coulombe, Tim T. Harkins, Tad S Sonstegard, De, S., Nefedov, M., Herrero, Javier, Blomberg, L. A., Lee, M.-K., Mary E. Delany, Raineri, E., Zhang, L., Hoffmann, S., De, S., Peter F Stadler, Kim, Sungwon, Zhang, X., Thero Modise, Beal, Kathryn, Sonstegard, T. S., Richard P. M. A. Crooijmans, Prickett, D., Steven Schroeder, Payne William S., Jennifer J. Dong, Groenen, M., Ann Blomberg, L., Lee Mi-Kyung, Zhang, Y., Flicek, P., Zimin, A.V., Dong Jennifer J., Schatz, Michael C., Coulombe Roger A., Peter F. Stadler, Flicek Paul, Javier Herrero, Paton, Ian R., Herrero, J., Ian R Paton, Dodgson, Jerry B., Steven L Salzberg, Shrinivasrao Mane, Stadler, Peter F., Pertea, G., Reed Kent M. +405 morecore +1 more source
