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Allele Identification in Assembled Genomic Sequence Datasets

2012
Allelic variation within species provides fundamental insights into the evolution and ecology of organisms, and information about this variation is becoming increasingly available in sequence datasets of multiple and/or outbred individuals. Unfortunately, identifying true allelic variants poses a number of challenges, given the presence of both ...
Katrina M, Dlugosch, Aurélie, Bonin
openaire   +2 more sources

Sequencing and Assembling Genomes and Chromosomes of Cereal Crops

2019
Next generation sequencing (NGS) and assembly are key pieces in the success of cereal crops genomes sequencing. One interesting strategy for reducing the complexity in large genomes, the case of several cereal crops, is the sequencing of individual chromosomes. This has been done with success by flow cytometric chromosome sorting followed by sequencing
openaire   +2 more sources

Sequencing, Assembling, and Finishing Complete Bacteriophage Genomes

2017
Next-generation DNA sequencing (NGS) technologies have made generating genomic sequence for organisms of interest affordable and commonplace. However, NGS platforms and analysis software are generally tuned to be used on large and complex genomes or metagenomic samples.
openaire   +2 more sources

Fully Phased Human Genome Assembly Without Parental Data Using Single-Cell Strand Sequencing and Long Reads

Nature Biotechnology, 2021
Mark J P Chaisson   +2 more
exaly  

A First Genome Assembly for Nanopore Sequencing

Nature Reviews Microbiology, 2015
Naomi Attar
exaly  

Nanopore Sequencing and the Shasta Toolkit Enable Efficient De Novo Assembly of Eleven Human Genomes

Nature Biotechnology, 2020
Kishwar Shafin   +2 more
exaly  

Translating Cancer Genomes and Transcriptomes for Precision Oncology

Ca-A Cancer Journal for Clinicians, 2016
Sunita Shankar, Sameek Roychowdhury
exaly  

Sequencing and De Novo Assembly of 150 Genomes From Denmark as a Population Reference

Nature, 2017
Kirstine Christensen Belling   +2 more
exaly  

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