Results 11 to 20 of about 305,884 (298)

Beyond microbial core genomic epidemiology: towards pan genomic epidemiology

The Lancet Microbe, 2022
Santiago Castillo-Ramírez
doaj   +3 more sources

Genomic Epidemiology [PDF]

, 2015
Aarestrup, Frank, Ahrenfeldt, Johanne, Bellod Cisneros, Jose Luis, Kaas, Rolf Sommer, Leekitcharoenphon, Shinny, Lukjancenko, Oksana, Lund, Ole, Tetzschner, Anna Maria Malberg, Thomsen, Martin   +8 more
core   +2 more sources

Bacterial genomic epidemiology with mixed samples [PDF]

Microbial Genomics, 2021
Genomic epidemiology is a tool for tracing transmission of pathogens based on whole-genome sequencing. We introduce the mGEMS pipeline for genomic epidemiology with plate sweeps representing mixed samples of a target pathogen, opening the possibility to sequence all colonies on selective plates with a single DNA extraction and sequencing step.
Mäklin, Tommi, Kallonen, Teemu, Alanko, Jarno, Samuelsen, Ørjan, Hegstad, Kristin, Mäkinen, Veli, Corander, Jukka, Heinz, Eva, Honkela, Antti   +8 more
openaire   +5 more sources

Genomics and epidemiological surveillance [PDF]

Nature Reviews Microbiology, 2020
This month’s Genome Watch highlights how genomic surveillance can provide important information for identifying and tracking emerging pathogens such as SARS-CoV-2.
Lo, Stephanie W., Jamrozy, Dorota
openaire   +2 more sources

Bacterial Genomics and Epidemiology

Microorganisms, 2023
Innovative technologies for Whole-Genome Sequencing (WGS) help to improve our understanding of the epidemiology and pathogenesis of bacterial infectious diseases and are becoming affordable for most microbiological laboratories [...]
Javier Garaizar, Lorena Laorden
openaire   +4 more sources

Genomic epidemiology on the move

Nature Reviews Microbiology, 2022
This Genome Watch article explores how portable sequencing technology is reshaping the field of genomic epidemiology.
Catherine N. Wilson, Patrick Musicha, Mathew A. Beale   +2 more
openaire   +2 more sources

The Human Genome Epidemiology Network [PDF]

American Journal of Epidemiology, 1998
Progress on the Human Genome Project has led to an explosion of genetic information (1). Of the estimated 100,000 human genes, more than 9,000 have been discovered, and more than 5,000 have been mapped to specific chromosomes (2). There are approximately 500 genes for which there are genetic tests used in medical practice (3). Almost daily, discoveries
M J, Khoury, J S, Dorman
openaire   +2 more sources

Human genome epidemiology, progress and future [PDF]

The Journal of Biomedical Research, 2013
Human genome epidemiology (HuGE) uses systematic applications of epidemiologic methods to assess the impact of human genetic variation on health and disease. In the past ten years, human genome epidemiology has made great progresses along with advances in genomics technologies, which make it possible for the examination of genetic variants in a large ...
Shen, Hongbing, Jin, Guangfu
openaire   +2 more sources

Genomic epidemiology and multilevel genome typing ofBordetella pertussis

Emerging Microbes & Infections, 2023
AbstractBordetella pertussisis responsible for the respiratory infectious disease pertussis (or whooping cough), which causes one of the most severe diseases in infants, although it can be prevented by whole cell and acellular vaccines. The recent resurgence of pertussis is partially due to pathogen adaptation to vaccines as well as resistance to ...
Michael Payne, Zheng Xu, Dalong Hu, Sandeep Kaur, Sophie Octavia, Vitali Sintchenko, Ruiting Lan   +6 more
openaire   +3 more sources

Genomic epidemiology of artemisinin resistant malaria [PDF]

eLife, 2016
The current epidemic of artemisinin resistant Plasmodium falciparum in Southeast Asia is the result of a soft selective sweep involving at least 20 independent kelch13 mutations. In a large global survey, we find that kelch13 mutations which cause resistance in Southeast Asia are present at low frequency in Africa.
Amato, R, Miotto, O, Woodrow, CJ, Almagro-Garcia, J, Sinha, I, Campino, S, Mead, D, Drury, E, Kekre, M, Sanders, M, Amambua-Ngwa, A, Amaratunga, C, Amenga-Etego, L, Andrianaranjaka, V, Apinjoh, T, Ashley, E, Auburn, S, Awandare, GA, Baraka, V, Barry, A, Boni, MF, Borrmann, S, Bousema, T, Branch, O, Bull, PC, Chotivanich, K, Conway, DJ, Craig, A, Day, NP, Djimde, A, Dolecek, C, Dondorp, AM, Drakeley, C, Duffy, P, Echeverry, DF, Egwang, TG, Fairhurst, RM, Faiz, MA, Fanello, CI, Tran, TH, Hodgson, A, Imwong, M, Ishengoma, D, Lim, P, Lon, C, Marfurt, J, Marsh, K, Mayxay, M, Michon, P, Mobegi, V, Mokuolu, OA, Montgomery, J, Mueller, I, Kyaw, MP, Newton, PN, Nosten, F, Noviyanti, R, Nzila, A, Ocholla, H, Oduro, A, Onyamboko, M, Ouedraogo, J-B, Phyo, APP, Plowe, C, Price, RN, Pukrittayakamee, S, Randrianarivelojosia, M, Ringwald, P, Ruiz, L, Saunders, D, Shayo, A, Siba, P, Takala-Harrison, S, Thanh, T-NN, Thathy, V, Verra, F, Wendler, J, White, NJ, Ye, H, Cornelius, VJ, Giacomantonio, R, Muddyman, D, Henrichs, C, Malangone, C, Jyothi, D, Pearson, RD, Rayner, JC, McVean, G, Rockett, KA, Miles, A, Vauterin, P, Jeffery, B, Manske, M, Stalker, J, Maclnnis, B, Kwiatkowski, DP   +95 more
openaire   +7 more sources