Results 21 to 30 of about 1,430,518 (311)

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

Briefings Bioinform., 2012
Data visualization is an essential component of genomic data analysis. However, the size and diversity of the data sets produced by today’s sequencing and array-based profiling methods present major challenges to visualization tools.
H. Thorvaldsdóttir, James T. Robinson, J. Mesirov   +2 more
semanticscholar   +1 more source

A theoretical framework for interaction of nursing discipline with genetics and genomics

International Journal of Nursing Sciences, 2018
Background: Since the completion of the Human Genome Project, health science has been strongly influenced by the advances in genetics and genomics. However, the progress of embracing genetics and genomics into nursing discipline is limited.
Jiale Hu, Leilei Yu, Shokoufeh Modanloo, Yiyan Zhou, Yan Yang   +4 more
doaj   +1 more source

The era of reference genomes in conservation genomics.

Trends in Ecology & Evolution, 2022
Progress in genome sequencing now enables the large-scale generation of reference genomes. Various international initiatives aim to generate reference genomes representing global biodiversity.
G. Formenti, Kathrin Theissinger, Carlos Fernandes, I. Bista, A. Bombarely, C. Bleidorn, C. Ciofi, A. Crottini, J. A. Godoy, J. Höglund, Joanna Malukiewicz, Alice Mouton, Rebekah A. Oomen, S. Paez, P. Palsbøll, C. Pampoulie, M. Ruiz-López, H. Svardal, C. Theofanopoulou, J. de Vries, A. Waldvogel, Guojie Zhang, C. Mazzoni, E. Jarvis, Miklós Bálint, F. Čiampor, J. Hoglund, P. Palsbøll, M. Ruiz-López, Goujie Zhang, E. Jarvis, S. Aghayan, T. Alioto, I. Almudi, N. Alvarez, P. Alves, I. Amorim, A. Antunes, P. Arribas, P. Baldrian, Paul R. Berg, G. Bertorelle, A. Böhne, A. Bonisoli‐Alquati, L. L. Boštjančić, B. Boussau, Catherine Marie Breton, E. Bužan, P. Campos, Carlos Carreras, L. F. Castro, L. J. Chueca, E. Conti, Robert Cook-Deegan, D. Croll, M. V. Cunha, Frédéric Delsuc, A. Dennis, D. Dimitrov, Rui Faria, A. Favre, O. Fedrigo, R. Fernández, G. Ficetola, Jean‐François Flot, T. Gabaldón, Dolores R. Galea Agius, G. Gallo, A. Giani, M. Gilbert, T. Grebenc, K. Guschanski, R. Guyot, B. Hausdorf, O. Hawlitschek, P. Heintzman, B. Heinze, Michaela Hiller, M. Husemann, Alessio Iannucci, Iker Irisarri, K. Jakobsen, S. Jentoft, Peter Klinga, A. Kloch, Claudius F. Kratochwil, Henrik Kusche, K. Layton, J. Leonard, E. Lerat, Gianni Liti, T. Manousaki, Tomàs Marquès-Bonet, Pável F. Matos‐Maraví, Michael Matschiner, F. Maumus, Ann M. Mc Cartney, Shai Meiri, J. Melo‐Ferreira, X. Mengual, M. Monaghan, M. Montagna, R. Mysłajek, M. Neiber, V. Nicolas, M. Novo, Petar Ozretić, F. Palero, L. Pârvulescu, Marta Pascual, O. Paulo, Martina Pavlek, C. Pegueroles, L. Pellissier, G. Pesole, C. Primmer, A. Riesgo, L. Rüber, D. Rubolini, D. Salvi, O. Seehausen, M. Seidel, Simona Secomandi, B. Studer, S. Theodoridis, M. Thines, L. Urban, A. Vasemägi, A. Vella, N. Vella, S. Vernes, C. Vernesi, D. Vieites, Robert M. Waterhouse, C. Wheat, G. Wörheide, Y. Wurm, G. Zammit   +137 more
semanticscholar   +1 more source

Visualization for genomics: the Microbial Genome Viewer [PDF]

Bioinformatics, 2004
Abstract Summary: A Web-based visualization tool, the Microbial Genome Viewer, is presented that allows the user to combine complex genomic data in a highly interactive way. This Web tool enables the interactive generation of chromosome wheels and linear genome maps from genome annotation data stored in a MySQL database.
Robert Kerkhoven, Frank H. J. van Enckevort, Jos Boekhorst, Douwe Molenaar, Roland J. Siezen   +4 more
openaire   +4 more sources

Development and validation of a radiogenomics model to predict axillary lymph node metastasis in breast cancer integrating MRI with transcriptome data: A multicohort study

Frontiers in Oncology, 2022
IntroductionTo develop and validate a radiogenomics model for predicting axillary lymph node metastasis (ALNM) in breast cancer compared to a genomics and radiomics model.MethodsThis retrospective study integrated transcriptomic data from The Cancer ...
Huifang Chen, Xiaosong Lan, Tao Yu, Lan Li, Sun Tang, Shuling Liu, Fujie Jiang, Lu Wang, Yao Huang, Ying Cao, Wei Wang, Xiaoxia Wang, Jiuquan Zhang   +12 more
doaj   +1 more source

Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their applications

Wellcome Open Research, 2018
The PubMLST.org website hosts a collection of open-access, curated databases that integrate population sequence data with provenance and phenotype information for over 100 different microbial species and genera. Although the PubMLST website was conceived
K. Jolley, J. Bray, M. Maiden
semanticscholar   +1 more source

NCBI GEO: archive for functional genomics data sets—update

Nucleic Acids Res., 2012
The Gene Expression Omnibus (GEO, http://www.ncbi.nlm.nih.gov/geo/) is an international public repository for high-throughput microarray and next-generation sequence functional genomic data sets submitted by the research community.
Tanya Barrett, S. E. Wilhite, Pierre Ledoux, Carlos Evangelista, Irene F. Kim, Maxim Tomashevsky, K. A. Marshall, Katherine H. Phillippy, Patti M. Sherman, Michelle Holko, A. Yefanov, H. Lee, Naigong Zhang, C. Robertson, N. Serova, Sean Davis, Alexandra Soboleva   +16 more
semanticscholar   +1 more source

u-Genome: A Database on Genome Design in Unicellular Genomes

In Silico Biology: Journal of Biological Systems Modeling and Multi-Scale Simulation, 2005
Unicellular eukaryotes were among the first ones to be selected for complete genome sequencing because of the small size of their genomes and their interactions with humans and a broad range of animals and plants. Currently, ten completely sequenced unicellular genome sequences have been publicly released and as the number of available unicellular ...
Sakharkar, K.R., Chaturvedi, I., Chow, V.T.K., Kwoh, C.K., Kangueane, P., Sakharkar, M.K.   +5 more
openaire   +3 more sources

Rice Genome Research: Current Status and Future Perspectives

The Plant Genome, 2008
Rice ( L.) is the leading genomics system among the crop plants. The sequence of the rice genome, the first cereal plant genome, was published in 2005. This review summarizes progress made in rice genome annotations, comparative genomics, and functional ...
Bin Han, Qifa Zhang
doaj   +1 more source

Circos: an information aesthetic for comparative genomics.

Genome Research, 2009
We created a visualization tool called Circos to facilitate the identification and analysis of similarities and differences arising from comparisons of genomes.
M. Krzywinski, J. Schein, I. Birol, J. Connors, R. Gascoyne, D. Horsman, Steven J. M. Jones, M. Marra   +7 more
semanticscholar   +1 more source