Results 21 to 30 of about 449,071 (283)

GBS-SNP-CROP: a reference-optional pipeline for SNP discovery and plant germplasm characterization using variable length, paired-end genotyping-by-sequencing data [PDF]

open access: yes, 2016
Background: With its simple library preparation and robust approach to genome reduction, genotyping-by-sequencing (GBS) is a flexible and cost-effective strategy for SNP discovery and genotyping, provided an appropriate reference genome is available. For
Bartaula, Radhika   +2 more
core   +2 more sources

A universal method for automated gene mapping [PDF]

open access: yes, 2005
Small insertions or deletions (InDels) constitute a ubiquituous class of sequence polymorphisms found in eukaryotic genomes. Here, we present an automated high-throughput genotyping method that relies on the detection of fragment-length polymorphisms ...
Basler, Konrad   +6 more
core   +2 more sources

The Polymorphism of Pituitary Factor 1 (POU1F1) in Cattle

open access: yesScientific Papers Animal Science and Biotechnologies, 2023
The development and function of mammary gland is mainly controlled by growth hormone and prolactin, two protein hormones secreted by the anterior pituitary gland.
Teodora Crina Carsai   +3 more
doaj  

Automated SNP genotype clustering algorithm to improve data completeness in high-throughput SNP genotyping datasets from custom arrays [PDF]

open access: yes, 2007
High-throughput SNP genotyping platforms use automated genotype calling algorithms to assign genotypes. While these algorithms work efficiently for individual platforms, they are not compatible with other platforms, and have individual biases that result
Edward M. Smith   +15 more
core   +2 more sources

VISMapper: ultra-fast exhaustive cartography of viral insertion sites for gene therapy

open access: yesBMC Bioinformatics, 2017
Background The possibility of integrating viral vectors to become a persistent part of the host genome makes them a crucial element of clinical gene therapy.
José M. Juanes   +7 more
doaj   +1 more source

Genotyping

open access: yesEgyptian Journal of Aquatic Research, 2014
Culture-independent 16S rRNA gene analysis approach was used to explore and evaluate archaea in a polluted site, El-Zeitia, Suez Gulf, Egypt. Metagenomic DNA was extracted from a sediment sample.
Hosam Easa Elsaied
doaj   +1 more source

Multivesicular hepatic human hydatid cyst from Iran: First genotyping‐based confirmation

open access: yesClinical Case Reports, 2022
Cystic echinococcosis is one of the most important zoonotic parasitic diseases caused by the tapeworm Echinococcus granulosus. To date, the genotype of multivesicular CE has not been identified.
Eissa Soleymani   +7 more
doaj   +1 more source

Evaluation of Quadruple Real-Time PCR Method to Detect Enterococci Carrying Vancomycin-Resistant Genes vanA, vanB, vanM in Rectal Swabs

open access: yesFrontiers in Medicine, 2020
Purpose: To evaluate the sensitivity and accuracy of the quadruple real-time PCR method for the detection of enterococci carrying vancomycin-resistant genes vanA, vanB, and vanM in rectal swabs.Methods: Choosing PCR-sequenced DNA extracted directly from ...
Yuanhui He   +7 more
doaj   +1 more source

Priors for Genotyping Polyploids [PDF]

open access: yesBioinformatics, 2019
AbstractMotivationEmpirical Bayes techniques to genotype polyploid organisms usually either (i) assume technical artifacts are knowna priorior (ii) estimate technical artifacts simultaneously with the prior genotype distribution. Case (i) is unappealing as it places the onus on the researcher to estimate these artifacts, or to ensure that there are no ...
Gerard, David   +1 more
openaire   +4 more sources

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