Results 41 to 50 of about 63,827 (265)

An unexpected alternative viologen electron mediator site in tungsten‐containing formate dehydrogenase

open access: yesFEBS Letters, EarlyView.
An unexpected alternative interaction site for ethyl viologen was identified in formate dehydrogenase 1 from Methylorubrum extorquens. Combined mutagenesis, kinetic analysis, and docking revealed that aromatic residues near an iron–sulfur cluster enable flavin mononucleotide‐independent electron transfer, offering a framework for engineering improved ...
Eleni G. Poloniataki, Yong Hwan Kim
wiley   +1 more source

Cell geometry and membrane protein crowding constrain Escherichia coli growth rate, overflow metabolism, respiration, and maintenance energy

open access: yesFEBS Letters, EarlyView.
The physical dimensions and shape of bacterial cells define the surface area available to acquire nutrients and the volume available for synthesizing proteins and DNA. Here, we use computational systems biology to decode the importance of cell geometry as a major determinant of prokaryotic phenotype, including growth rate and metabolic efficiency. This
Ross P. Carlson   +6 more
wiley   +1 more source

Determination of Sewing Thread Consumption for 602, 605, and 607 Cover Stitches Using Geometrical and Multi-Linear Regression Models

open access: yesAUTEX Research Journal, 2020
This work deals with prediction of the quantities of sewing threads required to sew a garment using cover stitches for the different classes of 600 (602, 605 and 607 cover stitches) by performing a rapid and precise methods (Geometrical and statistical).
Sarah Malek   +2 more
doaj   +1 more source

Three phosphatase families form a community: The phosphohydrolases that act upon inositol pyrophosphates

open access: yesFEBS Letters, EarlyView.
Inositol pyrophosphates are energy‐rich signaling molecules that perform critical functions in cells. Three different families of phosphatases hydrolyze the β phosphate of the inositol pyrophosphate molecules: two have narrow specificities and one is promiscuous.
Ronda J. Rolfes
wiley   +1 more source

Physical models from noncommutative causality

open access: yesEPJ Web of Conferences, 2018
We introduced few years ago a new notion of causality for noncommutative spacetimes directly related to the Dirac operator and the concept of Lorentzian spectral triple.
Franco Nicolas
doaj   +1 more source

Modelling stem cell differentiation related processes—A practical overview for biologists

open access: yesFEBS Letters, EarlyView.
Stem cell differentiation is complex and difficult to control experimentally. This review introduces suitable computational modelling approaches that can support stem cell research, from mechanistic ODE and abstract models to multiscale and deep learning methods.
Ricco Zeegelaar   +4 more
wiley   +1 more source

Large-Eddy Simulations of Unsteady Reaction Flow Characteristics Using Four Geometrical Combustor Models

open access: yesAerospace, 2023
Combustion instability constitutes the primary loss source of combustion chambers, gas turbines, and aero engines, and it affects combustion performance or results in a sudden local oscillation.
Nan Meng, Feng Li
doaj   +1 more source

Interval methods in geometric modeling

open access: yesProceedings Geometric Modeling and Processing 2000. Theory and Applications, 2000
This paper is about using interval computations in location, simplification, and root-finding for multivariate implicit functions that are used as shape primitives in a set-theoretic (that is, a CSG) geometric modeller. Three problems are discussed, and solutions to them presented: the location and simplification of the surfaces of semialgebraic sets ...
Bowyer, A   +4 more
openaire   +2 more sources

Reconstructing enzyme evolution by protein engineering

open access: yesFEBS Letters, EarlyView.
Natural enzyme evolution can be retraced by protein engineering methods such as directed evolution, rational design, and ancestral sequence reconstruction. These approaches reveal how enzymes emerged from ligand‐binding scaffolds, developed varying substrate preferences, formed oligomeric complexes, adapted to environmental changes, and evolved novel ...
Lukas Drexler   +2 more
wiley   +1 more source

Investigating transcription factor dynamics in health and disease using FRAP

open access: yesFEBS Letters, EarlyView.
FRAP analysis of GFP‐tagged transcription factors reveals how molecular mobility and target engagement change in response to drug treatment. By combining live‐cell imaging, quantitative model fitting, and statistical analysis, this approach uncovers transcription factor dynamics linked to disease mechanisms, providing a powerful framework for ...
Kannan Govindaraj   +3 more
wiley   +1 more source

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