Pure Parsimony Xor Haplotyping [PDF]
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2009 The haplotype resolution from xor-genotype data has been recently formulated as a new model for genetic studies. The xor-genotype data is a cheaply obtainable type of data distinguishing heterozygous from homozygous sites without identifying the ...
Bonizzoni, Paola +4 more
core +8 more sources
Detecting Local Haplotype Sharing and Haplotype Association [PDF]
Genetics, 2014 Abstract A novel haplotype association method is presented, and its power is demonstrated. Relying on a statistical model for linkage disequilibrium (LD), the method first infers ancestral haplotypes and their loadings at each marker for each individual.
Xu, Hanli, Guan, Yongtao
openaire +2 more sources
Persian Journal of Acarology, 2019 A molecular characterization based on mitochondrial cytochrome oxidase subunit I gene was used to genotype central-southern Iranian populations of Varroa destructor for the first time.
Zahra Hajializadeh +3 more
doaj +1 more source
Introgression Breeding in Barley: Perspectives and Case Studies
Frontiers in Plant Science, 2020 Changing production scenarios resulting from unstable climatic conditions are challenging crop improvement efforts. A deeper and more practical understanding of plant genetic resources is necessary if these assets are to be used effectively in developing
Javier Hernandez +2 more
doaj +1 more source
Search for Risk Haplotype Segments with GWAS Data by Use of Finite Mixture Models [PDF]
, 2015 The region-based association analysis has been proposed to capture the collective behavior of sets of variants by testing the association of each set instead of individual variants with the disease.
Ali, Fadhaa, Zhang, Jian
core +1 more source
Contracaecum sp. larvae (Nematoda: Anisakidae) parasitizing Astyanax lacustris (Lütken, 1875) (Characiformes, Characidae) and Geophagus brasiliensis (Quoy & Gaimard, 1824) (Cichliformes, Cichlidae) in the Pardo River, São Paulo State, southeast Brazil [PDF]
Brazilian Journal of BiologyAstyanax lacustris (n = 26) and Geophagus brasiliensis (n = 28) were collected from two sampling sites along the Pardo River, in Botucatu, São Paulo, Brazil, and examined for parasites.
H. L. Rocha +5 more
doaj +1 more source
Genotyping of invasive Ponto-Caspian gobies in Croatia [PDF]
Journal of Central European Agriculture, 2020 The biology and ecology of non-native freshwater Ponto-Caspian (P-C) gobies: monkey goby, Neogobius fluviatilis (Pallas, 1814), round goby, Neogobius melanostomus (Pallas, 1814) and bighead goby, Ponticola kessleri (Günther, 1861) have been studied in ...
Goran Jakšić +6 more
doaj +1 more source
Minimum error correction-based haplotype assembly: considerations for long read data
, 2020 The single nucleotide polymorphism (SNP) is the most widely studied type of genetic variation. A haplotype is defined as the sequence of alleles at SNP sites on each haploid chromosome.
de Ridder, Dick +2 more
core +1 more source
Single-nucleotide polymorphisms, mapping and association analysis of 1-FFT-A1 gene in wheat
Journal of Integrative Agriculture, 2017 Fructans are major nonstructural carbohydrates in wheat (Triticum aestivum L.). Fructan 1-fructosyltransferase (1-FFT) is the key enzyme in fructan biosynthesis. In the present study, 96 sequence variants were detected in the 1-FFT-A1 gene among 26 wheat
Ai-qin YUE +5 more
doaj +1 more source
Frontiers in Immunology, 2020 Human chromosome 19q13.4 contains genes encoding killer-cell immunoglobulin-like receptors (KIR). Reported haplotype lengths range from 67 to 269 kb and contain 4 to 18 genes.
David Roe +7 more
doaj +1 more source