Discovery of Single Nucleotide Polymorphisms in Complex Genomes Using SGSautoSNP
Biology, 2012 Single nucleotide polymorphisms (SNPs) are becoming the dominant form of molecular marker for genetic and genomic analysis. The advances in second generation DNA sequencing provide opportunities to identify very large numbers of SNPs in a range of ...
Jacqueline Batley +10 more
doaj +1 more source
Pan-genome and Haplotype Map of Cultivars and Their Wild Ancestors Provides Insights into Selective Evolution of Cassava ( Manihot esculenta Crantz) [PDF]
, 2023 Zhiqiang Xia +46 more
openalex +1 more source
Modeling Haplotype-Haplotype Interactions in Case-Control Genetic Association Studies
Frontiers in Genetics, 2012 Haplotype analysis has been increasingly used to study the genetic basis of human diseases, but models for characterizing genetic interactions between haplotypes from different chromosomal regions have not been well developed in the current literature ...
Li eZhang +4 more
doaj +1 more source
Geographic variation and evolutionary history of Dipodomys nitratoides (Rodentia: Heteromyidae), a species in severe decline [PDF]
, 2019 We examined geographic patterns of diversification in the highly impacted San Joaquin kangaroo rat, Dipodomys nitratoides, throughout its range in the San Joaquin Valley and adjacent basins in central California.
Cypher, BL +4 more
core
NGS Based Haplotype Assembly Using Matrix Completion
, 2019 We apply matrix completion methods for haplotype assembly from NGS reads to develop the new HapSVT, HapNuc, and HapOPT algorithms. This is performed by applying a mathematical model to convert the reads to an incomplete matrix and estimating unknown ...
Kahaei, MH, Majidian, Sina
core +1 more source
B-261 Identification of HLA-DQ2.5 Haplotype Using a Real-Time PCR Method [PDF]
, 2023 A H de Carvalho +2 more
openalex +1 more source
Polymorphisms of the _ENPP1_ gene are not associated with type 2 diabetes or obesity in the Chinese Han population [PDF]
, 2008 *Objective:* Type 2 Diabetes mellitus is a metabolic disorder characterized by chronic hyperglycemia and with a major feature of insulin resistance. Genetic association studies have suggested that _ENPP1_ might play a potential role in susceptibility to ...
Daizhan Zhou +11 more
core +1 more source
Pathogenic Variant Filtering for Mitochondrial Genome Haplotype Reporting [PDF]
, 2020 Charla Marshall +4 more
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Monitoring drought responses of barley genotypes with semi-robotic phenotyping platform and association analysis between recorded traits and allelic variants of some stress genes [PDF]
, 2013 Genetic improvement of complex traits such as drought adaptation can be advanced by the combination of genomic and phenomic approaches. Semi-robotic phenotyping platform was used for computer-controlled watering, digital and thermal imaging of barley ...
Cseri, András +5 more
core
Hayati Journal of Biosciences, 2008 The Mitochondrial DNA (mtDNA) displacement (D)-loop sequences were used to study the genetic diversity and relationship of Indonesian indigenous chickens.
SRI SULANDARI +2 more
doaj