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A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. [PDF]

open access: bronzeGenetics, 1992
We previously developed a cladistic approach to identify subsets of haplotypes defined by restriction endonuclease mapping or DNA sequencing that are associated with significant phenotypic deviations.
Alan R. Templeton   +2 more
openalex   +2 more sources

Association of HLA Genotype and Fulminant Type 1 Diabetes in Koreans [PDF]

open access: yesGenomics & Informatics, 2015
Fulminant type 1 diabetes (T1DM) is a distinct subtype of T1DM that is characterized by rapid onset hyperglycemia, ketoacidosis, absolute insulin deficiency, and near normal levels of glycated hemoglobin at initial presentation.
Soo Heon Kwak   +8 more
doaj   +1 more source

SNP and Haplotype Regional Heritability Mapping (SNHap-RHM): Joint Mapping of Common and Rare Variation Affecting Complex Traits

open access: yesFrontiers in Genetics, 2022
We describe a genome-wide analytical approach, SNP and Haplotype Regional Heritability Mapping (SNHap-RHM), that provides regional estimates of the heritability across locally defined regions in the genome.
Richard F. Oppong   +10 more
doaj   +1 more source

Determination of C,c,E and e Antigens Prevalence in Rh D Negative Individuals: Is it Good Exercise with Utilities in Clinical Blood Transfusion Practices? [PDF]

open access: yesJournal of Clinical and Diagnostic Research, 2022
Introduction: Besides D antigen, C,c,E and e antigens of Rh blood group system are the most important antigens involved in alloimmunisation. The prevalence of C,c,E and e antigens in Rh D negative individuals in local population has many utilities in ...
Manoj A Kahar
doaj   +1 more source

High fraction of silent recombination in a finite population two-locus neutral birth-death-mutation model [PDF]

open access: yesPhys. Rev. E 106, 024409 (2022), 2021
A precise estimate of allele and haplotype polymorphism is of great interest in theoretical population genetics, but also has practical applications, such as bone marrow registries management. Allele polymorphism is driven mainly by point mutations, while haplotype polymorphism is also affected by recombination. Current estimates treat recombination as
arxiv   +1 more source

Evaluation of cytochrome b sequence to identify Leishmania species and variants: the case of Panama [PDF]

open access: yesMemorias do Instituto Oswaldo Cruz, 2021
BACKGROUND The genetic heterogeneity of Leishmania parasites is a major factor responsible for the wide variety of Leishmania-associated manifestations.
Michelle Davila   +4 more
doaj   +1 more source

Discovery and Validation of Grain Shape Loci in U.S. Rice Germplasm Through Haplotype Characterization

open access: yesFrontiers in Genetics, 2022
Rice grain shape is a major determinant of rice market value and the end-use. We mapped quantitative trait loci (QTL) for grain shape traits in a bi-parental recombinant inbred line population (Trenasse/Jupiter) and discovered two major grain length QTLs—
Brijesh Angira   +2 more
doaj   +1 more source

Superior haplotypes for haplotype‐based breeding for drought tolerance in pigeonpea (Cajanus cajan L.)

open access: yesPlant Biotechnology Journal, 2020
Summary Haplotype‐based breeding, a recent promising breeding approach to develop tailor‐made crop varieties, deals with identification of superior haplotypes and their deployment in breeding programmes.
P. Sinha   +10 more
semanticscholar   +1 more source

SNP-Density Crossover Maps of Polymorphic Transposable Elements and HLA Genes Within MHC Class I Haplotype Blocks and Junction

open access: yesFrontiers in Genetics, 2021
The genomic region (~4 Mb) of the human major histocompatibility complex (MHC) on chromosome 6p21 is a prime model for the study and understanding of conserved polymorphic sequences (CPSs) and structural diversity of ancestral haplotypes (AHs)/conserved ...
Jerzy K. Kulski   +3 more
doaj   +1 more source

Optimizing Sequencing Resources in Genotyped Livestock Populations Using Linear Programming

open access: yesFrontiers in Genetics, 2021
Low-cost genome-wide single-nucleotide polymorphisms (SNPs) are routinely used in animal breeding programs. Compared to SNP arrays, the use of whole-genome sequence data generated by the next-generation sequencing technologies (NGS) has great potential ...
Hao Cheng   +4 more
doaj   +1 more source

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