Results 181 to 190 of about 39,833,464 (257)

HiC4D-SPOT: a spatiotemporal outlier detection tool for Hi-C data. [PDF]

Brief Bioinform
Shrestha B, Wang Z.
europepmc   +1 more source

Investigations of the Evolved Molecular Basis for Terpenoid Biosynthesis in Marine Sponges

Advanced Science, EarlyView.
Confirming and extending a previous observation in another Bubarida sponge, genomic and functional analyses of A. cavernosa reveal that sponges retain the mevalonate pathway and employ single α‐domain T1TSs and UbiA‐type TSs for terpenoid biosynthesis. The absence of T1TSs clustering with other biosynthetic genes tentatively suggests, based on limited ...
Fangyan Chen, Bao Chen, Wenhui Zhang, Guifang Sun, Yao Zhao, Jianpeng Zhang, Baofu Xu   +6 more
wiley   +1 more source

EmbedTAD Using Graph Embedding and Unsupervised Learning to Identify TADs from High-Resolution Hi-C Data. [PDF]

Commun Biol
Chowdhury HMAM, Oluwadare O.
europepmc   +1 more source

The Mitogen‐Activated Protein Kinase GhNTF3 Modulates the Arbuscular Mycorrhizal Symbiosis‐Immunity Trade‐Off in Cotton by Regulating Salicylic Acid Biosynthesis

Advanced Science, EarlyView.
AM symbiosis induces GhWAK13 to promote fungal colonization. GhNTF3 negatively regulates symbiosis by promoting SA biosynthesis. GhWAK13 sequesters GhNTF3 at the membrane, limiting its nuclear translocation and relieving SA‐mediated suppression. Under Verticillium stress, GhNTF3 enters the nucleus and interacts with GhJAZ6 to activate SA signaling ...
Shuangjie Jia, Jingshang Wen, Jihang Li, Meina Feng, Yiming He, Ruojun Liu, Qian Liu, Junli Zhang, Kai Cheng, Xiangyu Zhang, Xiao Zhang   +10 more
wiley   +1 more source

scHiCcompare: An R Package for Differential Analysis of Single-cell Hi-C Data. [PDF]

J Mol Biol
Nguyen M, Wall BPG, Harrell JC, Dozmorov MG.   +3 more
europepmc   +1 more source

scHiCDiff: detecting differential chromatin interactions in single-cell Hi-C data. [PDF]

Bioinformatics, 2023
Liu H, Ma W.
europepmc   +1 more source

CHST1 Drives Immunotherapy Resistance in Triple‐Negative Breast Cancer by Orchestrating an Immunosuppressive Microenvironment via the NKRF–CCL20–Macrophage Axis

Advanced Science, EarlyView.
Proposed model of CHST1‐associated immune remodeling in triple‐negative breast cancer. In CHST1‐low tumors, greater nuclear accumulation of NKRF is associated with repression of an NF‐κB‐related CCL20 transcriptional program and an immune‐inflamed microenvironment.
Shu‐Hao Jiang, Xiao‐Han Ying, Ruo‐Qing Wang, Qun Zhang, Li Chen, Zhi‐Ming Shao, Jun‐Jie Li   +6 more
wiley   +1 more source

DeepExDC interprets genomic compartmentalization changes in single-cell Hi-C data. [PDF]

Brief Bioinform
Lyu H, Cao P, Long W, Yin X, Xu S, Fu L.
europepmc   +1 more source

An Engineered HR1‐Stem Helix‐HR2 Trimeric Platform for Developing Broad‐Spectrum Coronavirus Vaccines

Advanced Science, EarlyView.
Sun et al. report a self‐assembling trimeric subunit vaccine platform termed RHS, which integrates the JN.1 receptor‐binding domain (RBD) with the heptad repeat 1 (HR1), stem helix (SH), and heptad repeat 2 (HR2) regions. The SARS‐CoV‐2 RHS vaccine elicits variant‐reactive RBD‐specific antibodies and cross‐reactive SH‐specific antibodies against ...
Xikui Sun, Junhao Fan, Xiaolu Xie, Yuting Shi, Xiaoqing Liu, Tiefeng Xu, Sidi Yang, Keda Shi, Chengshu Xie, Shixiong Li, Siwen Chen, Ruoxi Cai, Ping He, Yuzhen Ye, Tao Chen, Xiancai Ma, Chunmei Li, Jingyou Yu, Deyin Guo   +18 more
wiley   +1 more source

Effective Solvent‐Engineered All‐Inorganic CsPbI2Br Perovskite Solar Cells

Advanced Science, EarlyView.
All‐inorganic CsPbI2Br perovskite composition has gathered a lot of attention in recent years due to its thermal robustness, convenience for space applications as well as for the all‐perovskite triple junction applications as a top cell due to its wide‐bandgap (1.9 eV) nature.
Rajarshi Roy, Mahdi Malekshahi Byranvand, Tim Kodalle, Maximilian Krappel, Laxman Gouda, Stephan Boehringer, Chittaranjan Das, Mayank Kedia, Carolin M. Sutter‐Fella, Michael Saliba   +9 more
wiley   +1 more source