Results 31 to 40 of about 2,360,372 (228)
Computational tools for Hi‐C data analysis
Quantitative Biology, 2017 BackgroundIn eukaryotic genome, chromatin is not randomly distributed in cell nuclei, but instead is organized into higher‐order structures. Emerging evidence indicates that these higher‐order chromatin structures play important roles in regulating genome functions such as transcription and DNA replication.
Zhijun Han, Gang Wei
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Memory-Optimised Parallel Processing of Hi-C Data [PDF]
2015 23rd Euromicro International Conference on Parallel, Distributed, and Network-Based Processing, 2015 This paper presents the optimisation efforts on the creation of a graph-based mapping representation of gene adjacency. The method is based on the Hi-C process, starting from Next Generation Sequencing data, and it analyses a huge amount of static data in order to produce maps for one or more genes.
Maurizio Drocco +4 more
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Supplement_Material_1 Quality control of Hi-C data
, 2022 Quality control of Hi-C ...
Guofeng Meng (6159248)
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HiCUP: pipeline for mapping and processing Hi-C data [PDF]
F1000Research, 2015 HiCUP is a pipeline for processing sequence data generated by Hi-C and Capture Hi-C (CHi-C) experiments, which are techniques used to investigate three-dimensional genomic organisation. The pipeline maps data to a specified reference genome and removes artefacts that would otherwise hinder subsequent analysis.
Steven W. Wingett +6 more
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Scool: a new data storage format for single-cell Hi-C data
, 2020 MotivationSingle-cell Hi-C research currently lacks an efficient, easy to use and shareable data storage format. Recent studies have used a variety of sub-optimal solutions: publishing raw data only, text-based interaction matrices, or reusing ...
Grüning, Björn +7 more
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, 2023 Hi-C with WT and U1U2-DKO E8.5 mouse hearts was performed. The NGS data are used for paper publication. The resourse is shared here for more researches.
Chen Li (14812087)
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Hi-C analysis: from data generation to integration [PDF]
Biophysical Reviews, 2018 In the epigenetics field, large-scale functional genomics datasets of ever-increasing size and complexity have been produced using experimental techniques based on high-throughput sequencing. In particular, the study of the 3D organization of chromatin has raised increasing interest, thanks to the development of advanced experimental techniques.
Pal, Koustav +2 more
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Genomics and Computational Biology, 2017 The detailed analysis of chromatin structure has been enabled due to rapid development of chromosome conformation capture techniques. One of the most popular and widespread variations is high throughput conformation capture, or Hi-C, based on paired-end sequencing.
Aleksey Aleksandrovich Gavrilov +4 more
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Vapour reactive distillation process for hydrogen production by hi decomposition from hi-i2-h2o solutions [PDF]
, 2008 In this contribution, a sequential and hierarchical approach for the feasibility analysis and the preliminary design of reactive distillation columns is extended to systems involving vapour phase chemical reaction and is successfully applied to the HI ...
X. Joulia +11 more
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, 2022 Dependencies AMReX: release 22.02 openPMD-api: release 0.14.3 What's Changed Include destructor of hipace in profiler by @AlexanderSinn in https://github.com/Hi-PACE/hipace/pull/639 Pass the number of ghost cells to amrex::MultiFab::setVal, etc.
Lehe, Remi +6 more
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