Results 41 to 50 of about 373,405 (315)

Clinical features of Streptococcus intermedius infection in children: a case series study

Frontiers in Microbiology, 2023
IntroductionStreptococcus intermedius is an opportunistic pathogen associated with prolonged hospital stays and high mortality rates in adults. However, little is currently known about the clinical features of Streptococcus intermedius infection in ...
Zhufei Xu, Lichao Gao, Dan Xu, Dehua Yang, Zhimin Chen, Yingshuo Wang   +5 more
doaj   +1 more source

Wheat rusts never sleep but neither do sequencers: will pathogenomics transform the way plant diseases are managed? [PDF]

, 2015
Field pathogenomics adds highly informative data to surveillance surveys by enabling rapid evaluation of pathogen variability, population structure and host ...
Derevnina, Lida, Michelmore, Richard W
core   +2 more sources

Introducing SPeDE : high-throughput dereplication and accurate determination of microbial diversity from matrix-assisted laser desorption-ionization time of flight mass spectrometry data [PDF]

, 2019
The isolation of microorganisms from microbial community samples often yields a large number of conspecific isolates. Increasing the diversity covered by an isolate collection entails the implementation of methods and protocols to minimize the number of ...
Aerts, Maarten, Carlier, Aurélien, Cleenwerck, Ilse, Cnockaert, Margo, Dawyndt, Peter, De Canck, Evelien, Dumolin, Charles, Peiren, Jindrich, Schellaert, Simon, Van der Jeugt, Felix, Vandamme, Peter, Vandamme, Tim, Verheyde, Bart, Wieme, Anneleen   +13 more
core   +2 more sources

Detection of single nucleotide polymorphisms in virus genomes assembled from high-throughput sequencing data: large-scale performance testing of sequence analysis strategies

PeerJ, 2023
Recent developments in high-throughput sequencing (HTS) technologies and bioinformatics have drastically changed research in virology, especially for virus discovery. Indeed, proper monitoring of the viral population requires information on the different isolates circulating in the studied area.
Rollin, Johan, Bester, Rachelle, Brostaux, Yves, Caglayan, Kadriye, De Jonghe, Kris, Eichmeier, Ales, Foucart, Yoika, Haegeman, Annelies, Koloniuk, Igor, Kominek, Petr, Maree, Hans, Onder, Serkan, Posada Céspedes, Susana, Roumi, Vahid, Šafářová, Dana, Schumpp, Olivier, Ulubas Serce, Cigdem, Sõmera, Merike, Tamisier, Lucie, Vainio, Eeva, van der Vlugt, Rene AA, Massart, Sebastien   +22 more
openaire   +10 more sources

Rapid, High-Throughput Identification of Anthrax-Causing and Emetic Bacillus cereus Group Genome Assemblies via BTyper, a Computational Tool for Virulence-Based Classification of Bacillus cereus Group Isolates by Using Nucleotide Sequencing Data

Applied and Environmental Microbiology, 2017
The Bacillus cereus group comprises nine species, several of which are pathogenic. Differentiating between isolates that may cause disease and those that do not is a matter of public health and economic importance, but it can be particularly challenging ...
L. Carroll, J. Kovac, Rachel A. Miller, M. Wiedmann   +3 more
semanticscholar   +1 more source

A bioinformatics approach to microRNA-sequencing analysis

Osteoarthritis and Cartilage Open, 2021
The rapid expansion of Next Generation Sequencing (NGS) data availability has made exploration of appropriate bioinformatics analysis pipelines a timely issue.
Pratibha Potla, Shabana Amanda Ali, Mohit Kapoor   +2 more
doaj   +1 more source

GlobalFungi, a global database of fungal occurrences from high-throughput-sequencing metabarcoding studies

Scientific Data, 2020
Fungi are key players in vital ecosystem services, spanning carbon cycling, decomposition, symbiotic associations with cultivated and wild plants and pathogenicity.
T. Větrovský, D. Morais, P. Kohout, C. Lepinay, Camelia Algora, Sandra Awokunle Hollá, B. Bahnmann, Květa Bílohnědá, Vendula Brabcová, Federica D’Alò, Z. Human, M. Jomura, M. Kolařík, Jana Kvasničková, S. Lladó, R. López-Mondéjar, Tijana Martinović, T. Mašínová, L. Mészárošová, Lenka Michalčíková, Tereza Michalová, S. Mundra, Diana Navrátilová, I. Odriozola, Sarah Piché-Choquette, Martina Štursová, K. Švec, Vojtěch Tláskal, M. Urbanová, Lukáš Vlk, Jana Voříšková, Lucia Žifčáková, P. Baldrian   +32 more
semanticscholar   +1 more source

A Systematic Evaluation of High-Throughput Sequencing Approaches to Identify Low-Frequency Single Nucleotide Variants in Viral Populations [PDF]

Viruses, 2020
High-throughput sequencing such as those provided by Illumina are an efficient way to understand sequence variation within viral populations. However, challenges exist in distinguishing process-introduced error from biological variance, which significantly impacts our ability to identify sub-consensus single-nucleotide variants (SNVs).
David J. King, Graham Freimanis, Lidia Lasecka-Dykes, Amin Asfor, Paolo Ribeca, Ryan Waters, Donald P. King, Emma Laing   +7 more
openaire   +3 more sources

DUDE-Seq: Fast, flexible, and robust denoising for targeted amplicon sequencing. [PDF]

PLoS ONE, 2017
We consider the correction of errors from nucleotide sequences produced by next-generation targeted amplicon sequencing. The next-generation sequencing (NGS) platforms can provide a great deal of sequencing data thanks to their high throughput, but the ...
Byunghan Lee, Taesup Moon, Sungroh Yoon, Tsachy Weissman   +3 more
doaj   +1 more source

BamView: visualizing and interpretation of next-generation sequencing read alignments. [PDF]

, 2012
So-called next-generation sequencing (NGS) has provided the ability to sequence on a massive scale at low cost, enabling biologists to perform powerful experiments and gain insight into biological processes.
Berriman, Matthew, Carver, Tim, Harris, Simon R., McQuillan, Jacqueline A., Otto, Thomas D., Parkhill, Julian   +5 more
core   +1 more source