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A Stochastic model for dynamics of FtsZ filaments and the formation of Z-ring [PDF]

open access: yesEur. Phys. J. E (2020) 43: 43, 2018
Understanding the mechanisms responsible for the formation and growth of FtsZ polymers and their subsequent formation of the $Z$-ring is important for gaining insight into the cell division in prokaryotic cells. In this work, we present a minimal stochastic model that qualitatively reproduces {\it in vitro} observations of polymerization, formation of ...
Kumar, A. V. Anil   +2 more
arxiv   +3 more sources

Kinetic proofreading at single molecular level: Aminoacylation of tRNA^{Ile} and the role of water as an editor [PDF]

open access: yes, 2013
Proofreading/editing in protein synthesis is essential for accurate translation of information from the genetic code. In this article we present a theoretical investigation of efficiency of a kinetic proofreading mechanism that employs hydrolysis of the wrong substrate as the discriminatory step in enzyme catalytic reactions. We consider aminoacylation
Bagchi, Biman, Santra, Mantu
arxiv   +5 more sources

Coupling of actin hydrolysis and polymerization: Reduced description with two nucleotide states [PDF]

open access: yesEPL 89, 38010 (2010), 2011
The polymerization of actin filaments is coupled to the hydrolysis of adenosine triphosphate (ATP), which involves both the cleavage of ATP and the release of inorganic phosphate. We describe hydrolysis by a reduced two-state model with a cooperative cleavage mechanism, where the cleavage rate depends on the state of the neighboring actin protomer in a
Abramowitz M.   +6 more
arxiv   +3 more sources

Influence of Lipid Heterogeneity and Phase Behavior on Phospholipase A2 Action at the Single Molecule Level [PDF]

open access: yesBiophys. J. 2010, 98: 1873-1882, 2009
We monitored the action of phospholipase A2 (PLA2) on L- and D-dipalmitoylphosphatidylcholine (DPPC) Langmuir monolayers by mounting a Langmuir-trough on a wide-field fluorescence microscope with single molecule sensitivity. This made it possible to directly visualize the activity and diffusion behavior of single PLA2 molecules in a heterogeneous ...
Apitz-Castro   +46 more
arxiv   +5 more sources

Produksi dan Pemurnian Xilooligosakarida dari Xilan Tongkol Jagung menggunakan Xilanase Streptomyces P26B4 dan Khamir IP4

open access: yesJurnal Ilmu Pertanian Indonesia, 2021
Xylooligosaccharides (XOS) are sugar oligomers from xylan that can be used as prebiotics to improve digestive tract health. Xylan can be extracted from corncobs which are a by-product of agriculture.
Andika Susantri   +2 more
doaj   +1 more source

Bioethanol Production by Enzymatic Hydrolysis from Different Lignocellulosic Sources

open access: yesMolecules, 2021
As the need for non-renewable sources such as fossil fuels has increased during the last few decades, the search for sustainable and renewable alternative sources has gained growing interest.
K. Vasić, Ž. Knez, M. Leitgeb
semanticscholar   +1 more source

Hydrolysis of chiral organophosphorus compounds by phosphotriesterases and mammalian paraoxonase-1

open access: yesFrontiers in Bioscience-Landmark, 2020
Some organophosphorus compounds (OPs), which are used in the manufacturing of insecticides and nerve agents, are racemic mixtures with at least one chiral center with a phosphorus atom.
Antonio Monroy-Noyola   +2 more
doaj   +1 more source

Simultaneous Determination of L- and D-Amino Acids in Proteins: A Sensitive Method Using Hydrolysis in Deuterated Acid and Liquid Chromatography–Tandem Mass Spectrometry Analysis

open access: yesFoods, 2020
Determination of the L- and D-amino acid composition in proteins is important for monitoring process-induced racemization, and thereby protein quality loss, in food and feed. Such analysis has so far been challenging due to the need for sample hydrolysis,
Marianne Danielsen   +2 more
doaj   +1 more source

Investigation of phase equations for anaerobic digestion process of anaerobic bioreactor landfill [PDF]

open access: yesE3S Web of Conferences, 2020
The anaerobic digestion process consists of four phases hydrolysis, acidogenesis, acetogenesis and methanogenesis. In the present work anaerobic digestion process of waste from anaerobic bioreactor landfill is considered and leachate is analyzed ...
Shinde Priyanka R., Mali Sandip. T.
doaj   +1 more source

Production of Prebiotic Xylooligosaccharides via Dilute Maleic Acid-Mediated Xylan Hydrolysis Using an RSM-Model-Based Optimization Strategy

open access: yesFrontiers in Nutrition, 2022
Xylooligosaccharides (XOS) are functional feed additives that are attracting growing commercial interest owing to their excellent ability to modulate the composition of the gut microbiota.
Kankan Jiang   +9 more
doaj   +1 more source

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