Results 21 to 30 of about 72,615 (261)
Population genetic analysis of Plasmodium falciparum parasites using a customized Illumina GoldenGate genotyping assay. [PDF]
, 2011 The diversity in the Plasmodium falciparum genome can be used to explore parasite population dynamics, with practical applications to malaria control.
Abdoulaye Djimde +137 more
core +1 more source
Simulating Illumina metagenomic data with InSilicoSeq [PDF]
Bioinformatics, 2018 Abstract Motivation The accurate in silico simulation of metagenomic datasets is of great importance for benchmarking bioinformatics tools as well as for experimental design. Users are dependant on large-scale simulation to not only design experiments and new projects but also for accurate estimation ...
Hadrien Gourlé +3 more
openaire +2 more sources
Diagnostic applications of next generation sequencing: working towards quality standards [PDF]
, 2012 Over the past 6 years, next generation sequencing (NGS) has been established as a valuable high-throughput method for research in molecular genetics and has successfully been employed in the identification of rare and common genetic variations. All major
Klein, Hanns-Georg +27 more
core +1 more source
Quality Control for the Illumina HumanExome BeadChip [PDF]
Current Protocols in Human Genetics, 2016 AbstractThe Illumina HumanExome BeadChip and other exome‐based genotyping arrays offer inexpensive genotyping of some 240,000 mostly nonsynonymous coding variants across the human genome. The HumanExome chip, with its highly non‐uniform distribution of markers and emphasis on rare coding variants, presents some unique challenges for quality control (QC)
Robert P, Igo +4 more
openaire +2 more sources
QuorUM: An Error Corrector for Illumina Reads
PLOS ONE, 2015 Motivation: Illumina Sequencing data can provide high coverage of a genome by relatively short (100 bp150 bp) reads at a low cost. Our goal is to produce trimmed and error-corrected reads to improve genome assemblies. Our error correction procedure aims at producing a set of error-corrected reads (1) minimizing the number of distinct false k-mers, i.e.
Guillaume Marçais +2 more
openaire +4 more sources
Statistical issues in the analysis of Illumina data [PDF]
BMC Bioinformatics, 2008 Illumina bead-based arrays are becoming increasingly popular due to their high degree of replication and reported high data quality. However, little attention has been paid to the pre-processing of Illumina data. In this paper, we present our experience of analysing the raw data from an Illumina spike-in experiment and offer guidelines for those ...
Mark J. Dunning +4 more
openaire +5 more sources
Patient-reported outcomes associated with cancer screening: a systematic review
BMC Cancer, 2022 Background Multi-cancer early detection tests have been developed to enable earlier detection of multiple cancer types through screening. As reflected by patient-reported outcomes (PROs), the psychosocial impact of cancer screening is not yet clear.
Ashley Kim +3 more
doaj +1 more source
colford/nbgw-plant-illumina-pipeline: NBGW Plant Illumina Pipeline
, 2018 <p>This is a pipeline for processing of plant DNA data from an illumina run as employed by the National Botanic Garden of Wales. It is based on Dan Smith's (Aberystwyth University) original plant pipeline. It has been written to be specifically run
Col Ford
core +1 more source