Results 91 to 100 of about 14,795 (168)

PlantLTRdb: An interactive database for 195 plant species LTR-retrotransposons. [PDF]

Front Plant Sci, 2023
Mokhtar MM, Alsamman AM, El Allali A.
europepmc   +1 more source

Retrotransposon Tto1: functional analysis and engineering for insertional mutagenesis [PDF]

, 2011
Retrotransposons are genomic parasites activated by stress conditions that can be seriously detrimental for their host. In this work I demonstrate that Tto1, a typical plant LTR retrotransposon with insertion preference into genes can be turned into a ...
Tramontano, Andrea, Tramontano, Andrea, Tramontano, Andrea   +2 more
core  

Paleogenomic Analysis of the Short Arm of Chromosome 3 Reveals the History of the African and Asian Progenitors of Cultivated Rices [PDF]

Rice is one of the most important crops, feeding more than half of the world population. There are two cultivated species, the African rice Oryza glaberrima and the Asian rice O. sativa. Although
Altschul, Ammiraju, Anne Roulin, Baucom, Benoit Piégu, Casola, Cho, Cristian Chaparro, Doyle, Duan, Feschotte, Galtier, Ge, Hawkins, Huang, International Rice Genome Sequencing Project, Jones, Khush, Larkin, Linares, Ma, Ma, MasonGamer, Matsuoka, Morinaga, Muehlbauer, Navarro-Quezada, Olivier Panaud, Piegu, Porteres, Porteres, R Development Core Team, Raskina, SanMiguel, Sano, Scott Jackson, Second, Slotkin, Smith, Sonnhammer, Thompson, Vaughan, Viguier, Vitte, Vitte, Vitte, Wang, Xu, Xu, Yu, Zhu, Zou   +51 more
core   +2 more sources

Comparative analysis of bats and rodents' genomes suggests a relation between non-LTR retrotransposons, cancer incidence, and ageing. [PDF]

Sci Rep, 2023
Ricci M, Peona V, Boattini A, Taccioli C.   +3 more
europepmc   +1 more source

Lineage-specific amplification and epigenetic regulation of LTR-retrotransposons contribute to the structure, evolution, and function of Fabaceae species. [PDF]

BMC Genomics, 2023
Yang LL, Zhang XY, Wang LY, Li YG, Li XT, Yang Y, Su Q, Chen N, Zhang YL, Li N, Deng CL, Li SF, Gao WJ.   +12 more
europepmc   +1 more source

A Ribose Sugar Conformational Switch in the LTR-Retrotransposon Ty3 Polypurine Tract-Containing RNA/DNA Hybrid [PDF]

, 2005
Hye Young Yi-Brunozzi, Danielle M. Brabazon, Daniela Lener, Stuart F.J. Le Grice, John P. Marino   +4 more
openalex   +1 more source

Inpactor2: a software based on deep learning to identify and classify LTR-retrotransposons in plant genomes. [PDF]

Brief Bioinform, 2023
Orozco-Arias S, Humberto Lopez-Murillo L, Candamil-Cortés MS, Arias M, Jaimes PA, Rossi Paschoal A, Tabares-Soto R, Isaza G, Guyot R.   +8 more
europepmc   +1 more source

A Bioinformatics Approach for Detecting Repetitive Nested Motifs using Pattern Matching [PDF]

, 2016
The identification of nested motifs in genomic sequences is a complex computational problem. The detection of these patterns is important to allow discovery of transposable element (TE) insertions, incomplete reverse transcripts, deletions, and/or ...
Carballido, Jessica Andrea, Echenique, Carmen Viviana, Garbus, Ingrid, Ponzoni, Ignacio, Romero, José Rodolfo   +4 more
core  

Impact of LTR-Retrotransposons on Genome Structure, Evolution, and Function in Curcurbitaceae Species. [PDF]

Int J Mol Sci, 2022
Li SF, She HB, Yang LL, Lan LN, Zhang XY, Wang LY, Zhang YL, Li N, Deng CL, Qian W, Gao WJ.   +10 more
europepmc   +1 more source

Boty-II, a novel LTR retrotransposon in Botrytis cinerea B05.10 revealed by genomic sequence [PDF]

, 2009
Hong Tan, Ming Zhao, Jin Yan Zhou, Zhidong Li, Wei Song, You Jiu Tan   +5 more
openalex   +2 more sources