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Classification of LTR Retrotransposons via Interaction Prediction
2024 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB)Transposable Elements (TEs) are genetic sequences that can relocate within the genome, thus promoting genetic diversity. Classifying TEs in eukaryotes involves a hierarchy formed by classes, subclasses, orders, superfamilies, families, and subfamilies. According to this taxonomy, LTR retrotransposons (LTR-RT) constitute an order. The
Silvana C. S. Cardoso +4 more
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The Application of LTR Retrotransposons as Molecular Markers in Plants
2004Retrotransposons are major, dispersed components of most eukaryotic genomes. They replicate by a cycle of transcription, reverse transcription, and integration of new copies, without excising from the genome in the process. Because they represent a major share of the genome, cause easily detectable genetic changes having known ancestral and derived ...
Alan H, Schulman +2 more
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The Chironomus thummi genome contains a non-LTR retrotransposon
Molecular and General Genetics MGG, 1993Nineteen recombinant phages containing DNA from the region of Balbiani ring a (BRa), which develops on chromosome IV in cells of the special lobe of the Chironomus thummi salivary gland, were isolated from a Chironomus thummi genomic library. Three of the clones contained transposable element sequences that hybridized to more than 100 sites on all four
A G, Blinov +4 more
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A survey of LTR-retrotransposons in the Populus trichocarpa genome.
2009A survey of LTR-retrotransposons in the Populus trichocarpa genome.
COSSU, ROSA MARIA +4 more
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Stress Induced Activation of LTR Retrotransposons in the Drosophila melanogaster Genome
Life, 2023Alexander I Kim
exaly
[Plant active LTR retrotransposons: a review].
Sheng wu gong cheng xue bao = Chinese journal of biotechnology, 2017Long terminal repeat (LTR) retrotransposons are mobile DNA sequences that ubiquitously exist in eukaryotic genomes. They replicate themselves in the genome by copy-paste mechanism with RNA as medium. In higher plants, many active LTR retrotransposons have been applied to analyze molecular marker technology, genetic tagging, insertion mutation and gene ...
Linlin, Liang, Mingbing, Zhou
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LTRclassifier: A website for fast structural LTR retrotransposons classification in plants
Mobile Genetic Elements, 2016Cecile Monat +2 more
exaly