Results 91 to 100 of about 102,581 (254)

Single‐molecule DNA flow‐stretch assays for high‐throughput DNA–protein interaction studies

FEBS Open Bio, EarlyView.
We describe an optimised single‐molecule DNA flow‐stretch assay that visualises DNA–protein interactions in real time. Linear DNA fragments are tethered to a surface and stretched by buffer flow for fluorescence imaging. Using λ and φX174 DNA, this protocol enhances reproducibility and accessibility, providing a versatile approach for studying diverse ...
Ayush Kumar Ganguli, Mohammad Nour Alsamsam, Ugnė Bagdonaitė, Van Truc Vu, Chun‐Jen Huang, Polina Kuzhir, Mindaugas Zaremba, Aurimas Kopūstas, Marijonas Tutkus   +8 more
wiley   +1 more source

Manual and Semi-manual Comparison in the Annotation of CAPT Speech Corpus

Journal of Physics: Conference Series, 2019
Abstract Annotation plays an important role in a robust computer aided pronunciation training (CAPT) system. Manual annotation is time and annotator consuming. Automatic annotation is more efficient, but the accuracy is lower. This paper proposes to provide phoneme level labelling candidates with ASR models, and compare this method with ...
Yanlu Xie, Xing Wei, Wei Wang
openaire   +1 more source

Analysing the significance of small conformational changes and low occupancy states in serial crystallographic data

FEBS Open Bio, EarlyView.
This protocol paper outlines methods to establish the success of a time‐resolved serial crystallographic experiment, by means of statistical analysis of timepoint data in reciprocal space and models in real space. We show how to amplify the signal from excited states to visualise structural changes in successful experiments.
Jake Hill, Yelyzaveta Pulnova, Elke De Zitter, Helen M. Ginn, Briony A. Yorke   +4 more
wiley   +1 more source

ThrombUS+ Study A Annotation Manual

ThrombUS+ Study A aims to collect and create a labelled ultrasound image data set containing ultrasound image series and video clips of patients that undergo routine ultrasound scans on lower limbs, because of suspected deep vein thrombosis. The data will be used to train an AI model within ThrombUS+ project to achieve automated detection of deep vein ...
Didaskalou, Stylianos, Portoakallidis, Nikos, Kaldoudi, Eleni   +2 more
openaire   +4 more sources

Semi-Automatic Dataset Annotation Applied to Automatic Violent Message Detection

IEEE Access
Annotated corpora are indispensable tools to train computational models in Artificial Intelligence and Natural Language Processing. However, manual annotation is a costly, arduous, and time-consuming task, especially when the annotation is semantically ...
Beatriz Botella-Gil, Robiert Sepulveda-Torres, Alba Bonet-Jover, Patricio Martinez-Barco, Estela Saquete   +4 more
doaj   +1 more source

A quick guide for student-driven community genome annotation.

PLoS Computational Biology, 2019
High quality gene models are necessary to expand the molecular and genetic tools available for a target organism, but these are available for only a handful of model organisms that have undergone extensive curation and experimental validation over the ...
Prashant S Hosmani, Teresa Shippy, Sherry Miller, Joshua B Benoit, Monica Munoz-Torres, Mirella Flores-Gonzalez, Lukas A Mueller, Helen Wiersma-Koch, Tom D'Elia, Susan J Brown, Surya Saha   +10 more
doaj   +1 more source

Consistent Semantic Annotation of Outdoor Datasets via 2D/3D Label Transfer

Sensors, 2018
The advance of scene understanding methods based on machine learning relies on the availability of large ground truth datasets, which are essential for their training and evaluation.
Radim Tylecek, Robert B. Fisher
doaj   +1 more source

YIPFα1A expression is regulated by multilayered molecular mechanisms

FEBS Open Bio, EarlyView.
YIPFα1A, a five‐pass Golgi protein, is regulated at multiple layers. (1) Rare‐codon enrichment drives translation‐coupled mRNA decay. (2) A proximal 3′‐UTR element stabilizes mRNA. (3) A distal 3′‐UTR element included by alternate poly(A) site usage represses translation, which can be overridden by the proximal 3′‐UTR element.
Tokio Takaji, Yurika Nakanishi, Nobuhiro Nakamura   +2 more
wiley   +1 more source

Comparison of manual, machine learning, and hybrid methods for video annotation to extract parental care data

Journal of Avian Biology
Measuring parental care behaviour in the wild is central to the study of animal ecology and evolution, but it is often labour‐ and time‐intensive. Efficient open‐source tools have recently emerged that allow animal behaviour to be quantified from videos ...
Alex Hoi Hang Chan, Jingqi Liu, Terry Burke, William D. Pearse, Julia Schroeder   +4 more
doaj   +1 more source

AutoJudge: Judge Decoding Without Manual Annotation

CoRR
We introduce AutoJudge, a method that accelerates large language model (LLM) inference with task-specific lossy speculative decoding. Instead of matching the original model output distribution token-by-token, we identify which of the generated tokens affect the downstream quality of the response, relaxing the distribution match guarantee so that the ...
Garipov, Roman, Velikonivtsev, Fedor, Ermakov, Ivan, Svirschevski, Ruslan, Egiazarian, Vage, Ryabinin, Max   +5 more
openaire   +2 more sources