Unifying Parsimonious Tree Reconciliation
, 2013 Evolution is a process that is influenced by various environmental factors, e.g. the interactions between different species, genes, and biogeographical properties.
A.C. Berglund-Sonnhammer +28 more
core +1 more source
Actinopolyspora saharensis sp. nov., a novel halophilic actinomycete isolated from a Saharan soil of Algeria [PDF]
, 2012 A novel halophilic actinomycete, strain H32T,was isolated froma Saharan soil sample collected in El-Oued province, south Algeria. The isolate was characterized by means of polyphasic taxonomy. Optimal growth was determined to occur at 28–32°C, pH 6.0–7.0
Bouras, Noureddine +8 more
core +3 more sources
Bioinform., 2012 Motivation: Gene duplication (D), transfer (T), loss (L) and incomplete lineage sorting (I) are crucial to the evolution of gene families and the emergence of novel functions. The history of these events can be inferred via comparison of gene and species
Maureen Stolzer +5 more
semanticscholar +1 more source
Halorubrum chaoviator sp. nov., a haloarchaeon isolated from sea salt in Baja California, Mexico, Western Australia and Naxos, Greece [PDF]
, 2009 hree halophilic isolates, strains Halo-G*T, AUS-1 and Naxos II, were compared. Halo-G* was isolated from an evaporitic salt crystal from Baja California, Mexico, whereas AUS-1 and Naxos II were isolated from salt pools in Western Australia and the Greek ...
Legat, Andrea +5 more
core +1 more source
Inference of Ancient Whole-Genome Duplications and the Evolution of Gene Duplication and Loss Rates.
Molecular biology and evolution, 2019 Gene tree-species tree reconciliation methods have been employed for studying ancient whole-genome duplication (WGD) events across the eukaryotic tree of life.
A. Zwaenepoel, Y. Van de Peer
semanticscholar +1 more source
Genome-scale phylogenetic analysis finds extensive gene transfer among Fungi [PDF]
, 2015 Although the role of lateral gene transfer is well recognized in the evolution of bacteria, it is generally assumed that it has had less influence among eukaryotes.
Boussau, Bastien +4 more
core +4 more sources
Maximum Parsimony Inference of Phylogenetic Networks in the Presence of Polyploid Complexes
bioRxiv, 2020 Phylogenetic networks provide a powerful framework for modeling and analyzing reticulate evolutionary histories. While polyploidy has been shown to be prevalent not only in plants but also in other groups of eukaryotic species, most work done thus far on
Zhi Yan +4 more
semanticscholar +1 more source
Maximum likelihood models and algorithms for gene tree evolution with duplications and losses
BMC Bioinformatics, 2011 Background The abundance of new genomic data provides the opportunity to map the location of gene duplication and loss events on a species phylogeny. The first methods for mapping gene duplications and losses were based on a parsimony criterion, finding ...
Burleigh Gordon J +2 more
doaj +1 more source
Multiple Optimal Reconciliations Under the Duplication-Loss-Coalescence Model
IEEE/ACM Transactions on Computational Biology & Bioinformatics, 2019 Gene trees can differ from species trees due to a variety of biological phenomena, the most prevalent being gene duplication, horizontal gene transfer, gene loss, and coalescence.
Haoxing Du +8 more
semanticscholar +1 more source
Gene duplicability of core genes is highly consistent across all angiosperms [PDF]
, 2016 Gene duplication is an important mechanism for adding to genomic novelty. Hence, which genes undergo duplication and are preserved following duplication is an important question. It has been observed that gene duplicability, or the ability of genes to be
De Smet, Riet +5 more
core +4 more sources