Results 91 to 100 of about 40,506 (282)

Comparison of environmental DNA metabarcoding and bottom trawling for detecting seasonal fish communities and habitat preference in a highly disturbed estuary

Ecological Indicators, 2023
Environmental DNA (eDNA) metabarcoding has been used to study fish diversity in various aquatic ecosystems. However, studies on fish community structure in estuarine ecosystems have not been well corroborated by eDNA metabarcoding, and comparisons with ...
Peiwen Jiang, Shuai Zhang, Shannan Xu, Pengli Xiong, Yiting Cao, Zuozhi Chen, Min Li   +6 more
doaj   +1 more source

Metagenetic analysis of patterns of distribution and diversity of marine meiobenthic eukaryotes [PDF]

, 2014
AimMeiofaunal communities that inhabit the marine benthos offer unique opportunities to simultaneously study the macroecology of numerous phyla that exhibit different life-history strategies.
Carvalho, Gary R., Creer, Simon, Fonseca, Vera G., Johnson, Harriet F., Lambshead, John D., Neill, Simon P., Nichols, Ben, Power, Deborah M., Quince, Christopher, Thomas, W. Kelley   +9 more
core   +4 more sources

Does phylogeny explain bias in quantitative DNA metabarcoding?

Metabarcoding and Metagenomics, 2023
Estimating species biomass or abundance from the number of high-throughput sequencing (HTS) reads is an aspirational goal for DNA metabarcoding, yet studies have found varied correlations.
Mingxin Liu, C. Burridge, L. Clarke, S. Baker, G. Jordan   +4 more
semanticscholar   +1 more source

PIMBA: A PIpeline for MetaBarcoding Analysis [PDF]

, 2021
ABSTRACTSummaryDNA metabarcoding is an emerging monitoring method capable of assessing biodiversity from environmental samples (eDNA). Advances in computational tools have been required due to the increase of Next-Generation Sequencing data. Tools for DNA metabarcoding analysis, such as MOTHUR, QIIME, Obitools, and mBRAVE have been widely used in ...
Renato R. M. Oliveira, Raíssa Silva, Gisele L. Nunes, Guilherme Oliveira   +3 more
openaire   +2 more sources

Comparison and validation of some ITS primer pairs useful for fungal metabarcoding studies.

PLoS ONE, 2014
Current metabarcoding studies aiming to characterize microbial communities generally rely on the amplification and sequencing of relatively short DNA regions.
Michiel Op De Beeck, Bart Lievens, Pieter Busschaert, Stéphan Declerck, Jaco Vangronsveld, Jan V Colpaert   +5 more
doaj   +1 more source

Comparative environmental RNA and DNA metabarcoding analysis of river algae and arthropods for ecological surveys and water quality assessment

Scientific Reports, 2022
Environmental DNA (eDNA) metabarcoding is widely used for species analysis, while the use of environmental RNA (eRNA) metabarcoding is more limited. We conducted comparative eDNA/eRNA metabarcoding of the algae and arthropods (aquatic insects) in water ...
Kaede Miyata, Yasuaki Inoue, Yuto Amano, Tohru Nishioka, Tomohisa Nagaike, Takamitsu Kawaguchi, Osamu Morita, Masayuki Yamane, Hiroshi Honda   +8 more
doaj   +1 more source

Faecal metabarcoding provides improved detection and taxonomic resolution for non-invasive monitoring of gastrointestinal nematode parasites in wild moose populations

Parasites & Vectors, 2023
Background Although wild ungulate populations are heavily monitored throughout Europe, we understand little of how parasites affect population dynamics, and there is no systematic, long-term monitoring of parasite diversity and parasite loads.
M. Davey, S. Kamenova, F. Fossøy, E. Solberg, R. Davidson, A. Mysterud, C. Rolandsen   +6 more
semanticscholar   +1 more source

Scorpion metabarcoding v1

, 2022
The following steps include the protocols of the 1. Diet Regime 2. Dissection procedure 3. Beads extraction 4. Salt-out DNA extraction
openaire   +1 more source

The applicability of eDNA metabarcoding approaches for sessile benthic surveying in the Kimberley region, north‐western Australia

Environmental DNA, 2022
The application of environmental DNA technologies is a promising new approach to rapidly audit biodiversity across large‐scale, remote regions. Here, we examine the efficacy of a dual‐assay eDNA metabarcoding approach for sessile benthic bioassessments ...
Katrina M. West, Arne A. S. Adam, Nicole White, William D. Robbins, Daniel Barrow, Adrian Lane, Zoe T.Richards   +6 more
doaj   +1 more source

DNA metabarcoding reveals greater plant diversity than morphological seed analysis of bird feces

Applications in Plant Sciences, EarlyView.
Abstract Premise Fruit‐eating birds drive seed dispersal in recovering tropical ecosystems, shaping forest regeneration. Molecular techniques, such as DNA metabarcoding, enable diet analysis from feces and can provide complementary frugivory data where dispersal is infrequent, as well as aid in seed identification in hyper‐diverse regions lacking ...
Carina I. Motta, Bruno H. Saranholi, Vinicius Marciano De Godoy, Marina Corrêa Côrtes   +3 more
wiley   +1 more source