Results 11 to 20 of about 40,506 (282)
Toward quantitative metabarcoding
Ecology, 2022 Amplicon-sequence data from environmental DNA (eDNA) and microbiome studies provides important information for ecology, conservation, management, and health.
A. O. Shelton +10 more
semanticscholar +4 more sources
Disentangling bias for non-destructive insect metabarcoding [PDF]
PeerJ, 2022 A fast and reliable method for obtaining a species-level identification is a fundamental requirement for a wide range of activities, from plant protection and invasive species management to biodiversity assessments and ecological studies.
Francesco Martoni +3 more
doaj +4 more sources
Effective detection of indoor fungi by metabarcoding [PDF]
Annals of Microbiology, 2015 Metabarcoding technology through high-throughput sequencing can characterize the species composition of bulk samples, including even degraded DNA. In the present study, we conducted DNA metabarcoding (the nuclear ITS2 region) for indoor fungal samples originating from a nursery school with a suspected mould problem and from a university building.
Helena Korpelainen +2 more
openalex +3 more sources
Standardizing metadata and taxonomic identification in metabarcoding studies [PDF]
GigaScience, 2015 High-throughput sequencing-based metabarcoding studies produce vast amounts of ecological data, but a lack of consensus on standardization of metadata and how to refer to the species recovered severely hampers reanalysis and comparisons among studies. Here we propose an automated workflow covering data submission, compression, storage and public access
Leho Tedersoo +5 more
openalex +4 more sources
Quantification of marine benthic communities with metabarcoding [PDF]
Molecular Ecology Resources, 2021 AbstractDNA metabarcoding methods have been implemented in studies aimed at detecting and quantifying marine benthic biodiversity. In such surveys, universal barcodes are amplified and sequenced from environmental DNA. To quantify biodiversity with DNA metabarcoding, a relation between the number of DNA sequences of a species and its biomass and/or the
Lise Klunder +5 more
openaire +4 more sources
A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses.
Molecular Ecology Resources, 2023 Environmental DNA (eDNA) metabarcoding has gained growing attention as a strategy for monitoring biodiversity in ecology. However, taxa identifications produced through metabarcoding require sophisticated processing of high-throughput sequencing data ...
Ali Hakimzadeh +26 more
semanticscholar +1 more source
An Optimized Metabarcoding Method for Mimiviridae [PDF]
Microorganisms, 2020 Mimiviridae is a group of viruses with large genomes and virions. Ecological relevance of Mimiviridae in marine environments has been increasingly recognized through the discoveries of novel isolates and metagenomic studies. To facilitate ecological profiling of Mimiviridae, we previously proposed a meta-barcoding approach based on 82 degenerate primer
Kento Tominaga +13 more
openaire +5 more sources
Trends in DNA barcoding and metabarcoding [PDF]
Genome, 2019 Fil: Lijtmaer, Dario Alejandro. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario.
Adamowicz, Sarah J. +16 more
openaire +5 more sources
Diversity, 2022 DNA metabarcoding has proven to be an accessible, cost-effective, and non-invasive tool for dietary analysis of predators in situ. Although DNA metabarcoding provides numerous benefits in characterizing diet—such as detecting prey animals that are ...
Adam J. D. Marques +2 more
doaj +1 more source
Towards exhaustive community ecology via DNA metabarcoding
Molecular Ecology, 2023 Exhaustive biodiversity data, covering all the taxa in an environment, would be fundamental to understand how global changes influence organisms living at different trophic levels, and to evaluate impacts on interspecific interactions.
G. Ficetola, P. Taberlet
semanticscholar +1 more source