Results 91 to 100 of about 1,283,302 (227)

MetaCompass: Reference-guided Assembly of Metagenomes

open access: yesArXiv
18 pages, 6 figures, 3 tables, one supplementary ...
Luan, Tu   +10 more
openaire   +3 more sources

Metagenomic Assembly and Prokaryotic Metagenome-Assembled Genome Sequences from the Northern Gulf of Mexico “Dead Zone”

open access: yesMicrobiology Resource Announcements, 2018
Coastal regions experiencing declining dissolved oxygen are increasing in number and severity around the world. However, despite the importance of microbial metabolism in coastal hypoxia, few metagenomic surveys exist.
Thrash, J Cameron   +8 more
openaire   +5 more sources

Programming Gut Microbiome Function Through Cross‐Feeding: From Ecological Mechanisms to Live Biotherapeutics

open access: yesAdvanced Science, EarlyView.
This graphical abstract presents gut microbial cross‐feeding through a Mechanism–Technology–Application framework. It summarizes major resource‐transfer modes, the experimental and computational tools used to establish causality, and potential interventions involving dietary substrates, live biotherapeutic products, and engineered microbes.
Chuankai Sun   +7 more
wiley   +1 more source

Harnessing Large Language Models to Advance Microbiome Research: From Sequence Analysis to Clinical Applications

open access: yesAdvanced Intelligent Discovery, EarlyView.
Large language models are transforming microbiome research by enabling advanced sequence profiling, functional prediction, and association mining across complex datasets. They automate microbial classification and disease‐state recognition, improving cross‐study integration and clinical diagnostics.
Jieqi Xing   +4 more
wiley   +1 more source

MetaTrass: A high‐quality metagenome assembler of the human gut microbiome by cobarcoding sequencing reads

open access: yesiMeta, 2022
Metagenomic evidence of great genetic diversity within the nonconserved regions of the human gut microbial genomes appeals for new methods to elucidate the species‐level variability at high resolution.
Yanwei Qi   +12 more
doaj   +1 more source

metagenome-atlas/atlas: With new GTDB v05

open access: yes, 2020
ATLAS - Three commands to start analysing your metagenome ...
Silas Kieser   +9 more
core   +1 more source

Brugia malayi ATAC-seq metagenome assembly binned contigs

open access: yes, 2023
We performed ATAC-seq on Brugia malayi adult female samples containing the endosymbiotic bacterium Wolbachia. The reads were randomly downsampled to 10 million reads. Metagenome assembly was performed using metaSpades.
Lindsey Cantin (17513745)
core   +1 more source

High-fidelity gut metagenome: A new insight of identification of fuctional probiotics

open access: yesJournal of Integrative Agriculture
Probiotics are considered to exert beneficial effects in humans and animals by modulating the structure and metabolic functions of the gut microbiota. Therefore, the identification of functional probiotics and in-depth exploration of the characteristics ...
Yuhui Wang   +6 more
doaj   +1 more source

metagenome-atlas/atlas: V2.0.0

open access: yes, 2019
<p>ATLAS - Three commands to start analysing your metagenome data</p ...
Silas Kieser, Joe Brown
core   +1 more source

Brugia malayi ATAC-seq metagenome assembly all contigs

open access: yes, 2023
We performed ATAC-seq on Brugia malayi adult female samples containing the endosymbiotic bacterium Wolbachia. The reads were randomly downsampled to 10 million reads. Metagenome assembly was performed using metaSpades.
Lindsey Cantin (17513745)
core   +1 more source

Home - About - Disclaimer - Privacy