Results 131 to 140 of about 1,283,302 (227)

metaFlye: scalable long-read metagenome assembly using repeat graphs

, 2019
<p>Supplementary files for the manuscript titled "metaFlye: scalable long-read metagenome assembly using repeat graphs".</p> <p>The archive includes generated assemblies and the corresponding metaQUAST evaluations.</p ...
Mikhail Kolmogorov (4014656), Mikhail Kolmogorov   +1 more
core   +2 more sources

Comparison of the DNBSEQ platform and Illumina HiSeq 2000 for bacterial genome assembly

Scientific Reports
The Illumina HiSeq platform has been a commonly used option for bacterial genome sequencing. Now the BGI DNA nanoball (DNB) nanoarrays platform may provide an alternative platform for sequencing of bacterial genomes.
Tongyuan Hu, Jianwei Chen, Xiaoqian Lin, Wenxin He, Hewei Liang, Mengmeng Wang, Wenxi Li, Zhinan Wu, Mo Han, Xin Jin, Karsten Kristiansen, Liang Xiao, Yuanqiang Zou   +12 more
doaj   +1 more source

The chromosome-level genome sequences of the freshwater sponge, Spongilla lacustris (Linnaeus, 1759) and the chlorophyte cobiont Choricystis sp., and the associated microbial metagenome sequences [version 1; peer review: 2 approved]

Wellcome Open Research
We present a genome assembly from an individual Spongilla lacustris (freshwater sponge; Porifera; Demospongiae; Spongillida; Spongillidae). The genome sequence is 248.7 megabases in span.
Eerik Aunin, Victoria McKenna, Elizabeth Sinclair, Graeme Oatley, Sally P. Leys, Ute Hentschel, Camilla Santos, Noah Gettle, Haoyu Niu, Michael Paulini, Dirk Erpenbeck   +10 more
doaj   +1 more source

Mapping the omics landscape for peri‐implant diseases: A scoping review

Periodontology 2000, EarlyView.
Abstract Objectives To map omics evidence across peri‐implant health, peri‐implant mucositis, and peri‐implantitis, and to identify recurring molecular patterns and candidate biomarker signals relevant to diagnosis, monitoring, and treatment. Materials and Methods This scoping review included human studies using genomics, DNA methylation–based ...
Ethan Ng, Ioannis Fragkioudakis, Jeniffer Perussolo, John Rong Hao Tay, Elena Calciolari, Nikos Donos   +5 more
wiley   +1 more source

Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganisms [PDF]

, 2013
Eikmeyer FG, Rademacher A, Hanreich A, et al. Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganisms.
Sebastian Jaenicke, Eikmeyer, Felix Gregor ; https://orcid.org/, Zakrzewski, Martha, Schlüter, Andreas, Jaenicke, Sebastian, Antje Rademacher, Maus, Irena, Eikmeyer, Felix G., Alfred Pühler, Hennig, Magdalena, Klocke, Michael, Wibberg, Daniel, Michael Klocke, Andreas Schlüter, Schlüter, Andreas ; https://orcid.org/, Rademacher, Antje, Angelika Hanreich, Martha Zakrzewski, Daniel Wibberg, Magdalena Hennig, Pühler, Alfred, Pühler, Alfred ; https://orcid.org/, Felix G Eikmeyer, Hanreich, Angelika, Irena Maus   +24 more
core   +1 more source

A multi‐omics investigation of sarcopenia and frailty: Integrating genomic, epigenomic and telomere length data

Experimental Physiology, EarlyView.
Abstract Sarcopenia and frailty are complex geriatric syndromes influenced by a combination of genetic and environmental factors. Recent studies suggest that specific genetic variants, DNA methylation patterns and shortened telomeres are associated with age‐related diseases and might contribute to the development of both sarcopenia and frailty. In this
Valentina Ginevičienė, Erinija Pranckevičienė, Alina Urnikytė, Laura Jurkūnaitė, Kristijona Gutauskaitė, Rūta Dadelienė, Justina Kilaitė, Ieva Eglė Jamontaitė, Asta Mastavičiūtė, Ildus I. Ahmetov, Vidmantas Alekna   +10 more
wiley   +1 more source

High-quality Acinetobacter genomes recovered from combat wounds via metagenomic sequencing resemble cultured isolate genomes

Microbiology Spectrum
The ability to accurately characterize wound pathogens is critical to informing clinical decisions for wound infections with complex treatment requirements.
Jeffrey A. Kimbrel, James B. Thissen, Felipe A. Lisboa, Shalini Mabery, Crystal J. Jaing, Eric A. Elster, Seth A. Schobel, Nicholas A. Be   +7 more
doaj   +1 more source

Challenges and Future Directives of Synthetic Biology in Engineering Plant–Microbe Partnerships for Sustainable Agriculture

Biotechnology and Bioengineering, Volume 123, Issue 10, Page 2491-2519, October 2026.
ABSTRACT Synthetic biology has recently proven to be a valuable tool for enhancing agriculture even in the face of environmental and biological stresses. Understanding the challenges that militate synthetic biology will assist in ensuring safe, stable, and scalable crop production.
Ben Jesuorsemwen Enagbonma, Rebaona Reaobaka Molefe‐Madlaliso, Alaba Adewole Adebayo, Oghoye Priscilla Oyedoh, Godfrey Okainemen Oribhabor, Oluwaseun Emmanuel Shittu, Olubukola Oluranti Babalola   +6 more
wiley   +1 more source

Generation and application of pseudo-long reads for metagenome assembly. [PDF]

Gigascience, 2022
Sim M, Lee J, Wy S, Park N, Lee D, Kwon D, Kim J.   +6 more
europepmc   +1 more source

Metagenome-assembled genomes (MAGs) from biofloc microbiota.

We recovered over 500 metagenome-assembled genomes (MAGs) from the floc-associated microbiota of commercial biofloc aquaculture systems. These MAGs were then functionally annotated to understand the metabolic potential.
Rajeev Meora (16466445), Jang-Cheon Cho (8919272), Ilnam Kang (8732103), Ilsuk Jung (16468119)   +3 more
core   +1 more source