Results 161 to 170 of about 1,283,302 (227)

Viruses in the sediments around the trenches harbor diverse survival mechanisms

iMetaOmics, Volume 3, Issue 3, September 2026.
Deep‐sea trenches are the deepest and most isolated environments in the global ocean but the diversity and adaptation of the viral communities remain poorly characterized. In this study, 5563 viral operational taxonomic units (vOTUs) were identified from sediments of the Yap Trench and Western Caroline Basin.
Yue Su, Hao Yu, Shujuan Sun, Kaiyang Zheng, Ziyue Wang, Chen Gao, Guangxue Li, Xiaoshou Liu, Hongbing Shao, David Paez‐Espino, Andrew McMinn, Yantao Liang, Min Wang   +12 more
wiley   +1 more source

The chromosomal genome sequence of the marine leech, Branchellion lobata Moore, 1952 and its associated microbial metagenome sequences [version 1; peer review: 1 approved, 2 approved with reservations]

Wellcome Open Research
We present a genome assembly from an individual Branchellion lobata (the marine leech; Annelida; Clitellata; Hirudinida; Piscicolidae). The genome sequence is 174.1 megabases in span. Most of the assembly is scaffolded into 17 chromosomal pseudomolecules.
Eerik Aunin, Ralph Appy, Shana K. Goffredi, Victoria McKenna, Elizabeth Sinclair, Graeme Oatley, Camilla Santos, Haoyu Niu, Noah Gettle, Michael Paulini, José M. Martín-Durán, Rebecca O’Brien   +11 more
doaj   +1 more source

Metagenome Assembly and Metagenome-Assembled Genome of "Candidatus Aramenus sulfurataquae" from Thermal Sediments from the Los Azufres Volcanic Complex. [PDF]

Microbiol Resour Announc, 2021
Marín-Paredes R, Tapia-Torres Y, Martínez-Romero E, Quesada M, Servín-Garcidueñas LE.   +4 more
europepmc   +1 more source

Metagenome assembly and MAGs from shallow-water and exposed mats from the Solar Lake, Taba, Egypt

<p>Metagenome assembly and MAGs from the Solar Lake, Taba, Egypt shallow-water (S-SO1 and S-SO3) and exposed (S-SO2 and S-SO4) microbial mats.</p> <p>SO1-final.contigs.fa = fatsta file containing the contigs from the S-SO1 (N-SOshallow ...
Elbehery, Ali H. A., Siam, Rania, Abdallah, Rehab   +2 more
core   +1 more source

Evidence tiers for strain‐resolved long‐read metagenomics

iMetaOmics, Volume 3, Issue 3, September 2026.
Long‐read metagenomics links variants, repeats, and mobile elements across individual molecules and can reveal lineage turnover that is obscured at the species level. The strength of the resulting inference, however, depends on the type and genomic span of the recovered linkage. We distinguish four evidence units—strain profiles, local haplotype blocks,
Yanhua Han, Yunjuan Peng, Minghui Li, Xiaoyuan Wei, Jianmin Chai, Jiangchao Zhao, Ying Li, Feilong Deng   +7 more
wiley   +1 more source

The chromosomal genome sequence of the moon jellyfish, Aurelia sp. 4 Dawson et al. 2005 (Semaeostomeae: Ulmaridae) and its associated microbial metagenome sequences [version 1; peer review: 1 approved, 2 approved with reservations]

Wellcome Open Research
We present a genome assembly from an individual Aurelia sp. 4 Dawson et al., 2005 (moon jellyfish; Cnidaria; Scyphozoa; Semaeostomeae; Ulmaridae). The genome sequence has a total length of 462.10 megabases.
Eerik Aunin, Victoria McKenna, Graeme Oatley, Elizabeth Sinclair, Camilla Santos, Michael N. Dawson, Haoyu Niu, Noah Gettle, Michael Paulini, Rebecca O’Brien   +9 more
doaj   +1 more source

Artificial intelligence driven diet‐intestinal microbiota‐host health integration: A four‐dimensional paradigm for advancing host wellness research

iMetaOmics, Volume 3, Issue 3, September 2026.
This graphical abstract presents a novel Diet‐Artificial Intelligence (AI)‐intestinal Microbiota–Host Health paradigm integrating microbiota‐centric pathways and an AI‐driven multi‐omics workflow. Diet shapes gut bacteria that regulate intestinal mucosal integrity, immune signaling, and gut–brain neurotransmitters to influence host health.
Tianle He, Shuobo Zhang, Jiaxin Chen, Xiaoling Zheng, Jixin Zhao, Huifeng Li, Jiani Mao, Ju Luo, Jundan Zheng, Dengjun Ma, Lihong Wang, Junhui Liu, Wen Tian, Shuangming Yang, Chengli Liu, Ke Tian, Zhenguo Yang   +16 more
wiley   +1 more source

Small‐ and large‐scale patches shape benthic microbial community structure and functional gene composition in streams at the subcontinental scale

Limnology and Oceanography Letters, Volume 11, Issue 5, September 2026.
Abstract Streams process organic matter as water moves along the land‐to‐ocean continuum, making important contributions to global biogeochemical cycles. Yet, predicting stream microbial metabolism associated with biogeochemical transformations at broad spatial scales remains challenging.
Richard LaBrie, Rebecca L. Maher, Kelly S. Aho, Brittni L. Bertolet, Nicholas E. Ray, Paula C.J. Reis, Andrew L. Robison, Shannon L. Speir   +7 more
wiley   +1 more source

Evolutionary insights into bilin biosynthesis: Functional characterization of pre‐PcyA enzymes

Protein Science, Volume 35, Issue 9, September 2026.
Abstract Biosynthesis of the linear tetrapyrrole phycocyanobilin (PCB) by the ferredoxin‐dependent bilin reductase (FDBR) PcyA is essential for light‐harvesting and regulatory processes in diverse photosynthetic organisms, yet its evolutionary origins are not fully understood. PcyA evolved from pre‐PcyA proteins found in diverse bacteria.
Federica Frascogna, Nathan C. Rockwell, Gunhild Layer, Nicole Frankenberg‐Dinkel   +3 more
wiley   +1 more source

Compartment‐Specific Functional and Taxonomic Responses of Plant Growth‐Promoting Microbiomes Following Oxytetracycline Trunk Injection in Citrus

Journal of Sustainable Agriculture and Environment, Volume 5, Issue 3, September 2026.
ABSTRACT Huanglongbing (HLB), caused by Candidatus Liberibacter asiaticus, is the most destructive disease affecting citrus production worldwide. Trunk injection of oxytetracycline (OTC) is increasingly used to suppress the pathogen and improve tree performance, yet its ecological consequences for plant‐associated microbiomes remain poorly understood ...
Antonio Castellano‐Hinojosa, Jesús González‐López, Sarah L. Strauss, Ute Albrecht   +3 more
wiley   +1 more source