Results 181 to 190 of about 1,283,302 (227)

Efficient High-Quality Metagenome Assembly from Long Accurate Reads using Minimizer-space de Bruijn Graphs

, 2023
Benoit G, Raguideau S, James R, Phillippy AM, Chikhi R, Quince C.   +5 more
europepmc   +1 more source

First Animal Source Metagenome Assembly of <i>Lawsonella clevelandensis</i> from Canine External Otitis. [PDF]

Pathogens
Tóth AG, Solymosi N, Tenk M, Káldy Z, Németh T.   +4 more
europepmc   +1 more source

Boreal moss-microbe interactions are revealed through metagenome assembly of novel bacterial species. [PDF]

Sci Rep
Ishak S, Rondeau-Leclaire J, Faticov M, Roy S, Laforest-Lapointe I.   +4 more
europepmc   +1 more source

Metagenome assembly and annotation of data from the rhizosphere soil of drought-stressed CRN-3505 maize cultivar. [PDF]

Data Brief
Babalola OO, Molefe RR, Amoo AE.
europepmc   +1 more source

Integrated large-scale metagenome assembly and multi-kingdom network analyses identify sex differences in the human nasal microbiome. [PDF]

Genome Biol
Ju Y, Zhang Z, Liu M, Lin S, Sun Q, Song Z, Liang W, Tong X, Jie Z, Lu H, Cai K, Chen P, Jin X, Zhang W, Xu X, Yang H, Wang J, Hou Y, Xiao L, Jia H, Zhang T, Guo R.   +21 more
europepmc   +1 more source

De Novo Metagenome Assembly Using Read Clustering

, 2018
Kod metagenomskog sastavljanja, suočeni smo s mnogim dodatnim izazovima u odnosu na sastavljanje jednog genoma. U ovom radu, pokušali smo riješiti ove probleme grupiranjem segmenata koje proizvode alati treće generacije za sekvenciranje.
Škugor, Luka
core  

Reference guided genome assembly in metagenomic samples

, 2018
Metagenomic sequencing is a promising way to reconstruct genomes of a large diversity of bacterial species in their environment. To reconstruct the genome of a single interest species, current approaches require the metagenomic assembly of the whole community.
Guyomar, Cervin, Delage, Wesley, Legeai, Fabrice, Mougel, Christophe, Simon, Jean-Christophe, Lemaitre, Claire   +5 more
openaire   +2 more sources

Comparing and Evaluating Metagenome Assembly Tools from a Microbiologist's Perspective - Not Only Size Matters! [PDF]

PLoS One, 2017
Vollmers J, Wiegand S, Kaster AK.
europepmc   +1 more source

Scalable Algorithms for Metagenomic Assembly

Metagenomic sequencing captures the collective genome of microbial communities -- gut microbiomes, soil ecosystems,ocean water columns, and clinical specimens -- without cultivation. Assembly of metagenomic reads into contiguoussequences (contigs) and complete genomes (metagenome-assembled genomes, MAGs) is computationally challenging:samples contain ...
Noah Popescu, Ivan Rossi, Lea Lindberg
openaire   +1 more source

Utilizing de Bruijn graph of metagenome assembly for metatranscriptome analysis. [PDF]

Bioinformatics, 2016
Ye Y, Tang H.
europepmc   +1 more source